Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G21200 444 / 4e-154 Trihelix sequence-specific DNA binding transcription factors (.1) AT1G76870 349 / 9e-118 Trihelix unknown protein AT3G10040 171 / 3e-48 Trihelix sequence-specific DNA binding transcription factors (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G068700 [exp] 657 / 0 AT1G21200 445 / 1e-154 sequence-specific DNA binding transcription factors (.1) Potri.003G204700 [exp] 229 / 3e-70 AT1G21200 212 / 1e-63 sequence-specific DNA binding transcription factors (.1) Potri.001G019200 [exp] 222 / 2e-67 AT1G21200 212 / 1e-63 sequence-specific DNA binding transcription factors (.1) Potri.016G096300 [exp] 201 / 2e-59 AT3G10040 249 / 7e-78 sequence-specific DNA binding transcription factors (.1) Potri.006G117500 [exp] 201 / 3e-59 AT3G10040 249 / 3e-77 sequence-specific DNA binding transcription factors (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029777 [exp] 509 / 8e-180 AT1G21200 503 / 9e-178 sequence-specific DNA binding transcription factors (.1) Lus10042805 [exp] 496 / 6e-175 AT1G21200 496 / 8e-175 sequence-specific DNA binding transcription factors (.1) Lus10018886 [exp] 258 / 2e-82 AT1G21200 335 / 2e-113 sequence-specific DNA binding transcription factors (.1) Lus10028581 [exp] 256 / 2e-81 AT1G21200 369 / 8e-126 sequence-specific DNA binding transcription factors (.1) Lus10008643 [exp] 193 / 6e-56 AT3G10040 325 / 5e-107 sequence-specific DNA binding transcription factors (.1) Lus10035582 [exp] 190 / 7e-55 AT3G10040 326 / 2e-107 sequence-specific DNA binding transcription factors (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [poplar] [flax] HTH PF13837 [poplar] [flax] Myb_DNA-bind_4 Myb/SANT-like DNA-binding domain
Representative CDS sequence Show only first row Show all	>Potri.005G191700.3 pacid=42803115 polypeptide=Potri.005G191700.3.p locus=Potri.005G191700 ID=Potri.005G191700.3.v4.1 annot-version=v4.1 ATGGAAGGGAATTTGTCTCAAGGAGGTATGATTCCTGGCGGGGCTCCTTTTGGAGGCCCTGACTTGCAAGGATCAATGAGAGTTCATCATCAAGGGCAAC ATCCACACATTGTGCACCACCACCAGCATCCTATCCATCGCCAAGGATCTTCAACGCATCCCTCAGTTCACGATGGTTTTCCACTCACAATGGGGGCCAT GCACAAATCTGATCAAAACATGTCCATGACGGATTACAATAAAGGAGATGGGAGGAAAAATTCAGTCAGTGATGAGGATGAGCCAAGCTACACCGAAGAA GGTGCTGATGGTCACAGTGATGTAAGAAGAGGGAAAAAAGGGACTCCGTGGCACCGTGTTAAGTGGACTGATAAGATGGTGAGGCTCTTGATAACTGCCG TGTCTTATATCGGTGAGGATGCGACTTCAGATTGTGGTGGTGGAATGCGTAGGAGATTCACAGTTTTGCAGAAAAAAGGCAAGTGGAAATCAGTTTCAAA AGTCATGGCTGAAAGAGGTTTTCATGTTTCTCCACAGCAGTGTGAGGATAAATTCAATGACCTTAATAAAAGGTATAAAAGGCTCAATGATATGCTTGGG AGGGGCACTTCTTGTCAGGTTGTGGAAAACCCTGCACTTTTAGATGTTATAGATTATTTAACAGAGAAGGATAAGGATGATGTTAGGAAGATATTAAGCT CAAAGCATCTCTTCTATGAAGAAATGTGTTCCTATCATAATGGAAATAGGTTGCACCTGCCTCATGATCCAGCTTTGCAGCGTTCCCTACAGTTGGCTCT AAGAAGTAGAGATGATCATGACAACGATGATGTAAGGAGAAACCAGCTTGATGATCTTGATGAAGATGATCAAGAGATTGAAACTGATGATCATGATGAA TTTGGGGAGAATCATGCTTCCCATGGGGATAGTAGGGGCATACATGGGGTATTAGGGGGTTCTGCAAAGAGACCGAGACCAGGCCAGGGCCATGAAGATG TTTATTTTGGGAATTCATCTCAGGACCCTAATAAAGGGTCTTCTTATTCTCATCCACAGATTGCCCAAGTTGATATGAATCAAGTCTCTCCTGAAAGTTC AAGAGCATCCTGGTTGCAGAAGCAGTGGATGGAATCTCGCACACTTGAGTTGGAAGAACAGAATCTAAAAATTCAACAAGAGATGCTGGAATTGGAAAAA CAGCGATTCAAATGGCAAAGATTTAGTAAGAAAAGAGACCGTGAACTAGAAAAACTGAGGATGGAAAATGAGAGGATGAAGCTTGAGAATGAGCGGATGA CATTAGAGTTGAAACGCAAGGAAATGGGTGCTGATTTTAATTGA
AA sequence Show only first row Show all	>Potri.005G191700.3 pacid=42803115 polypeptide=Potri.005G191700.3.p locus=Potri.005G191700 ID=Potri.005G191700.3.v4.1 annot-version=v4.1 MEGNLSQGGMIPGGAPFGGPDLQGSMRVHHQGQHPHIVHHHQHPIHRQGSSTHPSVHDGFPLTMGAMHKSDQNMSMTDYNKGDGRKNSVSDEDEPSYTEE GADGHSDVRRGKKGTPWHRVKWTDKMVRLLITAVSYIGEDATSDCGGGMRRRFTVLQKKGKWKSVSKVMAERGFHVSPQQCEDKFNDLNKRYKRLNDMLG RGTSCQVVENPALLDVIDYLTEKDKDDVRKILSSKHLFYEEMCSYHNGNRLHLPHDPALQRSLQLALRSRDDHDNDDVRRNQLDDLDEDDQEIETDDHDE FGENHASHGDSRGIHGVLGGSAKRPRPGQGHEDVYFGNSSQDPNKGSSYSHPQIAQVDMNQVSPESSRASWLQKQWMESRTLELEEQNLKIQQEMLELEK QRFKWQRFSKKRDRELEKLRMENERMKLENERMTLELKRKEMGADFN

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G21200	Trihelix		sequence-specific DNA binding ...		Potri.005G191700 [exp]	0	1
AT5G12230		MED19A	unknown protein		Potri.009G156200 [exp]	5.47	0.7224
AT5G41770			crooked neck protein, putative...		Potri.001G094400 [exp]	5.91	0.7576
AT3G01610		CDC48C, EMB1354	embryo defective 1354, cell di...		Potri.013G151600 [exp]	7.07	0.7573	CDC48.4
AT2G34780		EMB1611, MEE22	EMBRYO DEFECTIVE 1611, materna...		Potri.011G161901 [exp]	11.61	0.7315
AT3G55160			unknown protein		Potri.004G128601 [exp]	14.69	0.6904
AT3G09670			Tudor/PWWP/MBT superfamily pro...		Potri.010G216900 [exp]	18.65	0.7248
AT5G15280			Pentatricopeptide repeat (PPR)...		Potri.017G086000 [exp]	18.81	0.7035
AT5G50990			Tetratricopeptide repeat (TPR)...		Potri.012G109300 [exp]	27.45	0.6800
AT1G03530		ATNAF1	nuclear assembly factor 1 (.1)		Potri.013G145300 [exp]	27.71	0.6839
AT2G06040			unknown protein		Potri.006G142200 [exp]	31.96	0.6797

Compare expression of checked genes

Potri.005G191700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.