Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G76900 607 / 0 TUB AtTLP1 tubby like protein 1 (.1.2) AT1G25280 593 / 0 TUB AtTLP10 tubby like protein 10 (.1.2.3) AT1G43640 587 / 0 TUB AtTLP5 tubby like protein 5 (.1) AT2G47900 468 / 3e-164 TUB AtTLP3 tubby like protein 3 (.1.2.3) AT2G18280 432 / 2e-150 TUB AtTLP2 tubby like protein 2 (.1.2) AT1G47270 406 / 7e-140 TUB AtTLP6 tubby like protein 6 (.1.2) AT5G18680 387 / 5e-133 TUB AtTLP11 tubby like protein 11 (.1) AT3G06380 381 / 2e-130 TUB ATTLP9 tubby-like protein 9 (.1) AT1G53320 346 / 7e-117 TUB AtTLP7 tubby like protein 7 (.1) AT1G61940 91 / 1e-20 TUB AtTLP4 tubby like protein 4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G068200 [exp] 798 / 0 AT1G76900 603 / 0.0 tubby like protein 1 (.1.2) Potri.005G192300 [exp] 790 / 0 AT1G76900 609 / 0.0 tubby like protein 1 (.1.2) Potri.010G031000 [exp] 446 / 5e-156 AT2G47900 531 / 0.0 tubby like protein 3 (.1.2.3) Potri.007G023400 [exp] 442 / 3e-154 AT2G18280 519 / 0.0 tubby like protein 2 (.1.2) Potri.008G195200 [exp] 437 / 1e-152 AT2G47900 544 / 0.0 tubby like protein 3 (.1.2.3) Potri.005G121600 [exp] 431 / 6e-150 AT2G18280 504 / 4e-179 tubby like protein 2 (.1.2) Potri.005G228500 [exp] 425 / 2e-147 AT1G47270 472 / 7e-166 tubby like protein 6 (.1.2) Potri.002G034600 [exp] 422 / 5e-146 AT1G47270 490 / 4e-173 tubby like protein 6 (.1.2) Potri.001G390200 [exp] 356 / 9e-121 AT1G53320 516 / 0.0 tubby like protein 7 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028579 [exp] 689 / 0 AT1G25280 597 / 0.0 tubby like protein 10 (.1.2.3) Lus10018884 [exp] 682 / 0 AT1G76900 596 / 0.0 tubby like protein 1 (.1.2) Lus10029780 [exp] 671 / 0 AT1G76900 615 / 0.0 tubby like protein 1 (.1.2) Lus10034106 [exp] 654 / 0 AT1G25280 585 / 0.0 tubby like protein 10 (.1.2.3) Lus10043482 [exp] 647 / 0 AT1G25280 589 / 0.0 tubby like protein 10 (.1.2.3) Lus10042807 [exp] 512 / 1e-171 AT3G53760 1013 / 0.0 GAMMA-TUBULIN COMPLEX PROTEIN 4 (.1) Lus10033977 [exp] 433 / 9e-151 AT2G47900 548 / 0.0 tubby like protein 3 (.1.2.3) Lus10012803 [exp] 431 / 9e-151 AT2G47900 523 / 0.0 tubby like protein 3 (.1.2.3) Lus10014299 [exp] 405 / 3e-139 AT2G18280 492 / 5e-174 tubby like protein 2 (.1.2) Lus10033209 [exp] 402 / 2e-138 AT1G47270 471 / 1e-165 tubby like protein 6 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0395 [poplar] [flax] Tubby_C PF01167 [poplar] [flax] Tub Tub family
Representative CDS sequence Show only first row Show all	>Potri.005G192400.1 pacid=42803967 polypeptide=Potri.005G192400.1.p locus=Potri.005G192400 ID=Potri.005G192400.1.v4.1 annot-version=v4.1 ATGTCATTCCGTAGTATAGTTCGTGACATGAGGGATGGATTTGGGAGCTTGTCGAGGCGGAGTTTTGAGGTCAGGCTGCCAGGTCATTTCAGAGGGAAAT CTCATGGCTCAGCATGTGAGTTGCTTGACCAGCCTGTGGTCATTCAGGATAGTCCTTGGGCTGGTCTTCCGCCAGAATTACTGCGAGATGTGATCAAGAG ATTGGAGGCAAGTGAGAGCACATGGCCTGCTCGCAAGCATGTTGTTGCTTGTGCTTCTGTGTGCAGGGCTTGGAGGGAAATGTGTAAAGAAATTGTAAGA AGTCCAGAGTTCTCTGGGAAGATCACCTTCCCTGTTTCCCTGAAGCAGCCAGGGCCCAGGGATGGAACCGTCCAGTGTTTCATAAAGAGGGACAAATCAA ACTTAACTTACCATCTTTTCCTTTGCCTTAGCCCTGCTTTGCTTGTTGAAAATGGAAAATTTCTTCTGTCTGCAAAACGTTCTCGGAGAACTACTTGCAC AGAATATGTAATTTCCATGGATGCAGACAACATATCAAAATCAAGCAGCACATATATTGGAAAACTAAGGTCAAATTTTCTGGGAACCAAATTTATAATT TATGACACGCAGCCCCCCTATAATAATGCTCAGCTTGCCCCACCTGGCCGAAGCCGTAGGTTCTACTCAAAGAAAGTTTCTCCAAAGGTTCCTACAGGCA GCTATAACATTGCTCATGTTACATATGAGCTGAATGTGCTTGGCACCCGGGGTCCACGAAGGATGCACTGCACCATGCACTCAATCCCTGTATCATCCCT TGAGCCTGGTGGTTCTGTCCCAGGCCAGCCTGAGCTCCTACCTTGCTCCCTTGAAGACTCATTTCGGAGCATTTCCTTTTCGAAATCAATTGACAATTCA ACTGAGTTTAGCAGTTCCCGGTTCTCCAACATTGTTGGGCCTCGAGAAGAAGATGAGGAGGGAAAGGAGAGACCACTGGTCCTCCGGAACAAGTCACCAA GATGGCATGAACAGTTGCAGTGCTGGTGCCTTAATTTCCGTGGGAGAGTGTCGGTTGCCTCTGTCAAGAACTTTCAGCTTGTTGCTGCAACGCAGCCTGC TGCTGGTGCACCAACACCTTCGCAGCCTGCTCAATCTGATCATGACAAGGTGATTCTTCAATTTGGTAAGGTTGGCAAAGATATGTTCACCATGGATTAC CGGTATCCTTTGTCTGCATTCCAGGCTTTTGCTATCTGCTTGAGCAGCTTTGACACTAAATTGGCATGTGAATAG
AA sequence Show only first row Show all	>Potri.005G192400.1 pacid=42803967 polypeptide=Potri.005G192400.1.p locus=Potri.005G192400 ID=Potri.005G192400.1.v4.1 annot-version=v4.1 MSFRSIVRDMRDGFGSLSRRSFEVRLPGHFRGKSHGSACELLDQPVVIQDSPWAGLPPELLRDVIKRLEASESTWPARKHVVACASVCRAWREMCKEIVR SPEFSGKITFPVSLKQPGPRDGTVQCFIKRDKSNLTYHLFLCLSPALLVENGKFLLSAKRSRRTTCTEYVISMDADNISKSSSTYIGKLRSNFLGTKFII YDTQPPYNNAQLAPPGRSRRFYSKKVSPKVPTGSYNIAHVTYELNVLGTRGPRRMHCTMHSIPVSSLEPGGSVPGQPELLPCSLEDSFRSISFSKSIDNS TEFSSSRFSNIVGPREEDEEGKERPLVLRNKSPRWHEQLQCWCLNFRGRVSVASVKNFQLVAATQPAAGAPTPSQPAQSDHDKVILQFGKVGKDMFTMDY RYPLSAFQAFAICLSSFDTKLACE

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G76900	TUB	AtTLP1	tubby like protein 1 (.1.2)		Potri.005G192400 [exp]	0	1
AT1G26110		DCP5	decapping 5 (.1.2)		Potri.017G111500 [exp]	1.41	0.8604
AT5G03340			ATPase, AAA-type, CDC48 protei...		Potri.012G088200 [exp]	4.24	0.8469
AT3G09670			Tudor/PWWP/MBT superfamily pro...		Potri.016G085500 [exp]	6.32	0.8332
AT1G05805	bHLH	bHLH128	basic helix-loop-helix (bHLH) ...		Potri.014G150600 [exp]	6.48	0.8333
AT3G13340			Transducin/WD40 repeat-like su...		Potri.014G147500 [exp]	7.74	0.8150
AT5G58003		CPL4	C-terminal domain phosphatase-...		Potri.018G108300 [exp]	9.16	0.8267
AT4G18700		ATWL4, CIPK12, ...	SNF1-RELATED PROTEIN KINASE 3....		Potri.004G058300 [exp]	10.14	0.7550
AT4G31770		ATDBR1	ARABIDOPSIS THALIANA DEBRANCHI...		Potri.018G015300 [exp]	10.48	0.8319
AT4G02280		ATSUS3, SUS3	sucrose synthase 3 (.1)		Potri.002G202300 [exp]	11.22	0.8004	SUS2.2
AT3G47500	DOF	CDF3, AtDof3,3	cycling DOF factor 3 (.1)		Potri.013G066700 [exp]	11.48	0.8125

Compare expression of checked genes

Potri.005G192400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.