Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G18740 461 / 2e-162 Protein of unknown function (DUF793) (.1) AT1G74450 450 / 4e-158 Protein of unknown function (DUF793) (.1) AT1G43630 423 / 3e-147 Protein of unknown function (DUF793) (.1) AT1G63930 259 / 5e-83 ROH1 from the Czech 'roh' meaning 'corner' (.1) AT4G11300 214 / 4e-66 Protein of unknown function (DUF793) (.1) AT4G23530 187 / 1e-55 Protein of unknown function (DUF793) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G067800 [exp] 681 / 0 AT1G18740 463 / 1e-163 Protein of unknown function (DUF793) (.1) Potri.001G099700 [exp] 295 / 3e-97 AT1G63930 418 / 5e-145 from the Czech 'roh' meaning 'corner' (.1) Potri.003G132100 [exp] 295 / 3e-97 AT1G63930 409 / 2e-141 from the Czech 'roh' meaning 'corner' (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028578 [exp] 556 / 0 AT1G18740 488 / 4e-173 Protein of unknown function (DUF793) (.1) Lus10018883 [exp] 545 / 0 AT1G18740 479 / 1e-169 Protein of unknown function (DUF793) (.1) Lus10029782 [exp] 539 / 0 AT1G18740 477 / 1e-168 Protein of unknown function (DUF793) (.1) Lus10042809 [exp] 529 / 0 AT1G74450 470 / 7e-166 Protein of unknown function (DUF793) (.1) Lus10028764 [exp] 277 / 6e-90 AT1G63930 477 / 3e-168 from the Czech 'roh' meaning 'corner' (.1) Lus10017519 [exp] 154 / 4e-45 AT1G63930 233 / 5e-76 from the Czech 'roh' meaning 'corner' (.1) Lus10018821 [exp] 61 / 4e-10 AT2G46080 431 / 5e-152 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0133 [poplar] [flax] AT14A-like PF05633 [poplar] [flax] BPS1 Protein BYPASS1-related
Representative CDS sequence Show only first row Show all	>Potri.005G192600.6 pacid=42804304 polypeptide=Potri.005G192600.6.p locus=Potri.005G192600 ID=Potri.005G192600.6.v4.1 annot-version=v4.1 ATGCCTGCCACAGACTATCAAAGCTCGTCGGCATCACTTAGACATTCTATTTTAGGTCTCCGACGCGACCAGGTCCATTCTATGGATTCTCCTCAAACTA CCTCAACTCTGGAGCTCGAACTCGATGCCTTTCAGAAACAAGTTACCGACCGATTTCTTGATTTATCAGCGGTCGGACCTGATCGTTTGCTTTCTTTAGC TTGGATCCGGAAACTTCTCGATTCTTTCCTCTGTTGTCAGGAGGAGTTTCGAGTGATTTTGTTCAATAACAAGTCGTTGGTCCATAGACCGCCGCTGGAC CGGTTAGTTCAGGAGTTTTTTGAACGGACTGTCAAGGCTTTGGATGTTTGTAACGCGATTCGTGATGGAATTGAGCAGATCAGAGAGTGGAAGAAGCTTT TGGAGATTGTTTTGTGTGCTTTGGATGATCAAAGATTGTTTGGTGAAGGTCAGTTTCGTCGTGCTAAAAAAGCTTTGATTGATTTGTCAATTTCTATGTT GGACGAGAAGGATTCGACTGCATCTACTTTGGCTCAAAGAAATCGGTCTTTTGGAAGACAACAAGCTTCGTCCAGAGATCAGCATCATAGGAATCTTGGG CATTTTAGATCGTTGTCGTGGAGCGTGTCGCGGTCGTGGTCTGCAGCCAGGCAGCTACAGGCAATTGGGAATAATTTGGTTGTGCCACGAGGAAATGAAG TTGTGGCCACTAATGGAATTGCGGTGGCTGTTTATTCTATGAACACGATTTTGCTTTTTGTAATGTGGGCACTTGTGGCTGCGATTCCGTGCCAGGACAG AGGATTGCAAGTGCATTTTTCCATTCCTAAGCAGTTCCCGTGGGCTCAATCGGTCTTGTCGTTGCACGAGAGGATCTTGGAGGAGTCGCGGAAAAGGGAT AGGAGGAATGCTTGTGGGTTGTTGAGAGAGCTTTACCAGATGGATAAGTGTACGAGGGTTATGAGCGAATTGACGGATTGGGCCCAGTTTCCATTAACAG AGGAAAAAGAAGGAGAGGTGAGGCAAAAAGTGATGGAATTGGCAAATGTTTGTGAGGTTTTAAAGGAGGGTTTGGATCCCTTGGAAAGACAAGTGAGAGA GGTGTTTCATAGGATTGTTCGCAGCCGGACTGAAGGGCTTGATTCTTTGGGAAGGCCTAATCACGAGTAA
AA sequence Show only first row Show all	>Potri.005G192600.6 pacid=42804304 polypeptide=Potri.005G192600.6.p locus=Potri.005G192600 ID=Potri.005G192600.6.v4.1 annot-version=v4.1 MPATDYQSSSASLRHSILGLRRDQVHSMDSPQTTSTLELELDAFQKQVTDRFLDLSAVGPDRLLSLAWIRKLLDSFLCCQEEFRVILFNNKSLVHRPPLD RLVQEFFERTVKALDVCNAIRDGIEQIREWKKLLEIVLCALDDQRLFGEGQFRRAKKALIDLSISMLDEKDSTASTLAQRNRSFGRQQASSRDQHHRNLG HFRSLSWSVSRSWSAARQLQAIGNNLVVPRGNEVVATNGIAVAVYSMNTILLFVMWALVAAIPCQDRGLQVHFSIPKQFPWAQSVLSLHERILEESRKRD RRNACGLLRELYQMDKCTRVMSELTDWAQFPLTEEKEGEVRQKVMELANVCEVLKEGLDPLERQVREVFHRIVRSRTEGLDSLGRPNHE

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G18740			Protein of unknown function (D...		Potri.005G192600 [exp]	0	1
AT5G67250		VFB4, SKIP2	VIER F-BOX PROTEINE 4, SKP1/AS...		Potri.007G048101 [exp]	1.41	0.9447
AT5G67250		VFB4, SKIP2	VIER F-BOX PROTEINE 4, SKP1/AS...		Potri.005G141800 [exp]	3.46	0.9055	SKIP2.2
AT4G04885		PCFS4	PCF11P-similar protein 4 (.1)		Potri.007G134000 [exp]	4.24	0.8737
AT1G70090		GATL9, LGT8	GALACTURONOSYLTRANSFERASE-LIKE...		Potri.008G192600 [exp]	5.00	0.9014
AT2G37430	C2H2ZnF	ZAT11	C2H2 and C2HC zinc fingers sup...		Potri.001G235800 [exp]	6.48	0.8976
AT5G42380		CML39, CML37	CALMODULIN LIKE 39, calmodulin...		Potri.002G001400 [exp]	6.48	0.8954
AT1G23710			Protein of unknown function (D...		Potri.010G041300 [exp]	7.21	0.9016
AT5G47850		CCR4	CRINKLY4 related 4 (.1)		Potri.019G078300 [exp]	9.16	0.8653
AT1G19210	AP2_ERF		Integrase-type DNA-binding sup...		Potri.018G047300 [exp]	10.39	0.8427
AT4G08950		EXO	EXORDIUM, Phosphate-responsive...		Potri.005G163700 [exp]	10.39	0.8703

Compare expression of checked genes

Potri.005G192600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.