Plant FIBer expression Database

Potri.005G192700 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G76770 147 / 8e-41 HSP20-like chaperones superfamily protein (.1)
AT1G76780 73 / 3e-13 HSP20-like chaperones superfamily protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.002G067700
[exp]
260 / 4e-81 AT1G76770 160 / 3e-46 HSP20-like chaperones superfamily protein (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10028577
[exp]
208 / 3e-62 AT1G76770 152 / 3e-44 HSP20-like chaperones superfamily protein (.1)
Lus10018882
[exp]
200 / 4e-59 AT1G76770 153 / 2e-44 HSP20-like chaperones superfamily protein (.1)
Lus10024258
[exp]
45 / 3e-05 AT5G04890 61 / 2e-11 RESTRICTED TEV MOVEMENT 2, HSP20-like chaperones superfamily protein (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0190 HSP20 PF00011 HSP20 Hsp20/alpha crystallin family
Representative CDS sequence
>Potri.005G192700.1 pacid=42803380 polypeptide=Potri.005G192700.1.p locus=Potri.005G192700 ID=Potri.005G192700.1.v4.1 annot-version=v4.1
ATGGAGTTAGAACTGGGACTCAAGATCACCCATACTAGAGATGATATCACCTCCTTCACCGGCCTTCGGGTTGCTAAAGACCATGCTGGTCCTCTCTTCT
TGTCTAGAGAAACCGAGACCATGTTCAACCTTATTGCATATCTCACAGGTGCAGGTTTTAGAAAGGAGAATATTGACATCAAGATTAGTGAAGATGGTAA
TCAGATCACAATCAGTGGGAAGAAGCCAGTTCAGGAGCTGGTGTTGGTAGGGTGGATTATGCACAAGAAAGAGGTTGAGTTAAGGGCATTCAGCAAGGCT
TTTCGAATCCCTCATGGTGTCATTTTGGATAAAATCAAGGCAAAATTCAGTGACCAAGATTTGACTTTGACGATTACTCTGCCGAAATTGGTGAAAGGAA
TTCGTGGTGTTGGGATAGAGGAAGTGAAGGAAGAGGAGGTTGATAAAGGGAGAGGTGAAGCTACACAAATCACAGCGGATAGGGCTCCGGAAGGAGAGTG
TAGAGAGCCCGAGATGAAGAAGGTGGAAGAAATCGACCAAGTTGTGCAAAAGGAGATGAATACAAGGGAAGCTGAAACAACAAGAGCAGTAGCTCTTGAG
CTTTCAAGGAAAGAAAAAGATAATGAAGCAGCGAAGGAAGAAAGCATAGAGCCCAAGATTAGAACAGATGAAGAAACTGCTCAGGTCAAGGAGCAGGCAA
TTGATCAAGGGCAATTCAAGGAAGTAGAAGAGGTAGCTGATCACATGTCCGGTGAAAGAGACAATAGCAAAGAGATAATACAGGAAAAATCTGCAGAGCC
AAATATTAAAAGCAAGGAAGAAAGTGAAAAGTTTGTGGAACAGAAGGTTGATGCGGGTGACAGAGTGCCTGAAAGAGTTAGAGATACAACGTTACAAAGG
AAACCTGAACCTAAAGATCAGAGCGAAATAGAAGAAGCCATTCTTGATAAGTCAGAGCCTCCTGCTACTGCTACCACAGCTACATATCAGGAAACAACAA
TCAAGGACTCTAAGCAGTTTAAGCCAGAGAAAGAGATTGAGCACCAAGAGCCAAAAGAGCCCACTCTAGGTGAAGAAACGGAAAGCAAGGAGCTTCCTGG
TTTGAAAGAGCAGTGGAAGAAACAGGAAACTCCAGAGGCCAAGAGCACGGATGAAGAAACATTGCCAAAACATCCAGAGCGCAATGAATTGCTACAAGCT
TTCAAGGATCTAGTGACTAAACAACCAGAAGCGTCAAACCAACCATCATCTCAAGCTAATCAAGAACATGCTGTAGAAGAAAATCACCCAGTCAGGGCTG
AAATATCACAAGAATCAGTAAAGCTGGGAACAGAAACGAATGTTCAAGAACCAACGACACCTGGACCTGATCAAGAAAAAAAGCTGGCAGATAAATCAAG
AAATGATGAAGCGCAGGAAATCAACGAAGCAACAACTGATGATGTTGTAGAAGAGCATGAATTGGTAAAGGTGAAGGATCTAGGTGAAAGAGCAACAAAT
AGAAAGAATTCTGTTTCAAGAGGAACCAAGTTATTTCCTCCTCTTGTTGTTGCAGGGTCGGCCATTCTTGTCTCTATCATAGTGCTTGTCATTAGTTGGA
TTAGAGCTAAGAAAAGGTGA
AA sequence
>Potri.005G192700.1 pacid=42803380 polypeptide=Potri.005G192700.1.p locus=Potri.005G192700 ID=Potri.005G192700.1.v4.1 annot-version=v4.1
MELELGLKITHTRDDITSFTGLRVAKDHAGPLFLSRETETMFNLIAYLTGAGFRKENIDIKISEDGNQITISGKKPVQELVLVGWIMHKKEVELRAFSKA
FRIPHGVILDKIKAKFSDQDLTLTITLPKLVKGIRGVGIEEVKEEEVDKGRGEATQITADRAPEGECREPEMKKVEEIDQVVQKEMNTREAETTRAVALE
LSRKEKDNEAAKEESIEPKIRTDEETAQVKEQAIDQGQFKEVEEVADHMSGERDNSKEIIQEKSAEPNIKSKEESEKFVEQKVDAGDRVPERVRDTTLQR
KPEPKDQSEIEEAILDKSEPPATATTATYQETTIKDSKQFKPEKEIEHQEPKEPTLGEETESKELPGLKEQWKKQETPEAKSTDEETLPKHPERNELLQA
FKDLVTKQPEASNQPSSQANQEHAVEENHPVRAEISQESVKLGTETNVQEPTTPGPDQEKKLADKSRNDEAQEINEATTDDVVEEHELVKVKDLGERATN
RKNSVSRGTKLFPPLVVAGSAILVSIIVLVISWIRAKKR

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT1G76770 HSP20-like chaperones superfam... Potri.005G192700
[exp]
0 1
AT3G50120 Plant protein of unknown funct... Potri.001G071200
[exp]
2.00 0.9414
AT3G49810 ARM repeat superfamily protein... Potri.014G014300
[exp]
2.82 0.9348
AT3G54220 GRAS SGR1, SCR SHOOT GRAVITROPISM 1, SCARECRO... Potri.006G114200
[exp]
3.46 0.9311
AT1G47480 alpha/beta-Hydrolases superfam... Potri.014G032600
[exp]
4.12 0.8924
AT3G01680 SEOR1, SEOb Sieve-Element-Occlusion-Relate... Potri.010G050300
[exp]
4.24 0.9334
AT3G22104 Phototropic-responsive NPH3 fa... Potri.004G030600
[exp]
5.19 0.8845
AT1G72125 Major facilitator superfamily ... Potri.017G145550
[exp]
6.16 0.8759
AT5G45540 Protein of unknown function (D... Potri.007G123100
[exp]
6.70 0.8978
AT1G65910 NAC ANAC028 NAC domain containing protein ... Potri.004G081000
[exp]
7.93 0.9167
AT3G26932 DRB3 dsRNA-binding protein 3 (.1.2) Potri.001G325300
[exp]
8.36 0.8780

Potri.005G192700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.