Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G20180 156 / 7e-44 Protein of unknown function (DUF677) (.1), Protein of unknown function (DUF677) (.2) AT3G49070 137 / 8e-37 Protein of unknown function (DUF677) (.1) AT3G19330 103 / 9e-25 Protein of unknown function (DUF677) (.1), Protein of unknown function (DUF677) (.2), Protein of unknown function (DUF677) (.3) AT3G19250 95 / 1e-21 Protein of unknown function (DUF677) (.1) AT4G34320 45 / 6e-05 Protein of unknown function (DUF677) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G067300 [exp] 570 / 0 AT1G20180 130 / 2e-34 Protein of unknown function (DUF677) (.1), Protein of unknown function (DUF677) (.2) Potri.005G243800 [exp] 171 / 2e-49 AT1G20180 252 / 2e-80 Protein of unknown function (DUF677) (.1), Protein of unknown function (DUF677) (.2) Potri.002G018200 [exp] 154 / 2e-43 AT1G20180 288 / 2e-94 Protein of unknown function (DUF677) (.1), Protein of unknown function (DUF677) (.2) Potri.015G147400 [exp] 150 / 1e-41 AT3G49070 253 / 1e-80 Protein of unknown function (DUF677) (.1) Potri.010G240200 [exp] 101 / 1e-23 AT3G19330 311 / 9e-104 Protein of unknown function (DUF677) (.1), Protein of unknown function (DUF677) (.2), Protein of unknown function (DUF677) (.3) Potri.T125304 [exp] 49 / 2e-06 AT4G34320 528 / 0.0 Protein of unknown function (DUF677) (.1) Potri.009G112430 [exp] 49 / 2e-06 AT4G34320 528 / 0.0 Protein of unknown function (DUF677) (.1) Potri.004G150800 [exp] 46 / 2e-05 AT4G34320 536 / 0.0 Protein of unknown function (DUF677) (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005612 [exp] 159 / 6e-45 AT1G20180 268 / 1e-86 Protein of unknown function (DUF677) (.1), Protein of unknown function (DUF677) (.2) Lus10028573 [exp] 141 / 9e-40 AT3G49070 102 / 4e-25 Protein of unknown function (DUF677) (.1) Lus10017286 [exp] 143 / 5e-39 AT1G20180 265 / 1e-85 Protein of unknown function (DUF677) (.1), Protein of unknown function (DUF677) (.2) Lus10010144 [exp] 115 / 2e-28 AT1G20180 260 / 4e-83 Protein of unknown function (DUF677) (.1), Protein of unknown function (DUF677) (.2) Lus10039258 [exp] 108 / 7e-28 AT3G49070 168 / 1e-50 Protein of unknown function (DUF677) (.1) Lus10017348 [exp] 110 / 8e-27 AT1G20180 255 / 4e-81 Protein of unknown function (DUF677) (.1), Protein of unknown function (DUF677) (.2) Lus10031977 [exp] 108 / 4e-26 AT3G19330 284 / 2e-93 Protein of unknown function (DUF677) (.1), Protein of unknown function (DUF677) (.2), Protein of unknown function (DUF677) (.3) Lus10035125 [exp] 82 / 5e-18 AT3G19330 183 / 1e-56 Protein of unknown function (DUF677) (.1), Protein of unknown function (DUF677) (.2), Protein of unknown function (DUF677) (.3) Lus10018879 [exp] 63 / 2e-12 AT3G49070 56 / 2e-10 Protein of unknown function (DUF677) (.1) Lus10027501 [exp] 61 / 2e-10 AT3G49070 98 / 2e-23 Protein of unknown function (DUF677) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0133 [poplar] [flax] AT14A-like PF05055 [poplar] [flax] DUF677 Protein of unknown function (DUF677)
Representative CDS sequence Show only first row Show all	>Potri.005G193000.1 pacid=42804266 polypeptide=Potri.005G193000.1.p locus=Potri.005G193000 ID=Potri.005G193000.1.v4.1 annot-version=v4.1 ATGATGTGGGTCAAATCTAGAGCTTCAAAGAACAGAAAAGATGGGAAGGAATTCAGGGATGCCTGTAAAAGCTTGAATGTCAACGAGGAGTATCTTAGCG CGTTAAGAACCCAATCCTATGCTGATTTTTTCACCAAAGCTCAATCACTTGTAAACGAGCCATCTTTTCCATCTTACTGCCATAGAAAATTTTCTGAAAT TCTCCTGGAACCGGGTCAGGATTCTATACCTGCAATTCTCGAATCAGCTTTTCTTTCAAAAGTACCTGAACTCAAAGGCCTCATGCTCAATTACTTTGAC CTGAGTGCCGAGGCTTCAAATGTTTGTAGCTACCTCGTCAAAAATATAAACCAGATCCAATCTAGTTACCAGTTCATTCAAAGAGTGCTGAATAGTATCG ATGATTACTCGCCTGATAAATTGAAATTGATTGTCTCCGAGCTGAACTCATTCATTGTCCAAAGCAATCCTTTTTCCACTCCTAACAAGCATGACTTCAA GTTAATTAACGACAGGTACTCTTCAGTTCTAAACCACCTAAAATCCAAAAGAAAAAAGGTGGCTAGGAAGATGAAGTTCATTGCATATATCCATAAGGCT TCAGGAATTTGCATAACAGCAGCCTGTGGCTTAATTGCAATTTCAGCTATTGTTCTAGCAGCACATACTCTTACTGTCGTAGTTATGGGTCCAGCCATTT TGAGCTTCCCACTAAAGCGCTTCAAGAAAAAGCTTTTGAGCTTTAAGTTTCTGAGAAGTGGATTCCTAAGGAAAGTCGGGCAGCAACTTGATGTGGCAGC CAAGGCAACTTACATATTGAATAGGGATTTTGACACGATGAGTAGACTTGTTGCTAGGCTTCACGATGAAGTTGAACACGACAAGGCAATGATACAGTTC TGTTTGGAGAGGAAAGAGGATAGATTTTCCTTTCAAGTGATAAAGGAGCTTAAGAAGAGTGATTCTGGGTTCAGGAAGCAGGTAGAGGAGCTTGAAGAGC ACGTGTATCTCTGCCTGCTAACGATTAATCGAGCAAGAGCATTAGTGATTAAGGAAATGACAGCATCTAGCATTGAACATTTCAGTTACTAG
AA sequence Show only first row Show all	>Potri.005G193000.1 pacid=42804266 polypeptide=Potri.005G193000.1.p locus=Potri.005G193000 ID=Potri.005G193000.1.v4.1 annot-version=v4.1 MMWVKSRASKNRKDGKEFRDACKSLNVNEEYLSALRTQSYADFFTKAQSLVNEPSFPSYCHRKFSEILLEPGQDSIPAILESAFLSKVPELKGLMLNYFD LSAEASNVCSYLVKNINQIQSSYQFIQRVLNSIDDYSPDKLKLIVSELNSFIVQSNPFSTPNKHDFKLINDRYSSVLNHLKSKRKKVARKMKFIAYIHKA SGICITAACGLIAISAIVLAAHTLTVVVMGPAILSFPLKRFKKKLLSFKFLRSGFLRKVGQQLDVAAKATYILNRDFDTMSRLVARLHDEVEHDKAMIQF CLERKEDRFSFQVIKELKKSDSGFRKQVEELEEHVYLCLLTINRARALVIKEMTASSIEHFSY

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G20180			Protein of unknown function (D...		Potri.005G193000 [exp]	0	1
AT5G18860		NSH3	nucleoside hydrolase 3, inosin...		Potri.008G197400 [exp]	2.82	0.8488
AT1G08990		PGSIP5	plant glycogenin-like starch i...		Potri.005G033500 [exp]	3.60	0.9042
AT2G44260			Plant protein of unknown funct...		Potri.001G232500 [exp]	4.47	0.8798
AT4G30380		EXLB2	Barwin-related endoglucanase (...		Potri.018G031901 [exp]	7.48	0.8498
AT1G68470			Exostosin family protein (.1)		Potri.001G382200 [exp]	7.74	0.8688
AT1G17430			alpha/beta-Hydrolases superfam...		Potri.001G168600 [exp]	8.36	0.8673
AT5G50260		CEP1	cysteine endopeptidase 1, Cyst...		Potri.012G090900 [exp]	8.83	0.8283
AT1G68470			Exostosin family protein (.1)		Potri.001G381900 [exp]	12.24	0.8569
AT4G37770		ACS8	1-amino-cyclopropane-1-carboxy...		Potri.002G113900 [exp]	12.60	0.7454
AT4G00210	AS2	LBD31	LOB domain-containing protein ...		Potri.014G070300 [exp]	13.41	0.8216

Compare expression of checked genes

Potri.005G193000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.