Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G43620 806 / 0 UGT80B1, TT15 TRANSPARENT TESTA 15, UDP-Glycosyltransferase superfamily protein (.1.2.3) AT3G07020 597 / 0 UGT80A2, SGT UDP-glucosyl transferase 80A2, sterol glucosyltransferase, UDP-Glycosyltransferase superfamily protein (.1.2) AT5G24750 84 / 1e-16 UDP-Glycosyltransferase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G067100 [exp] 1071 / 0 AT1G43620 800 / 0.0 TRANSPARENT TESTA 15, UDP-Glycosyltransferase superfamily protein (.1.2.3) Potri.002G238600 [exp] 603 / 0 AT3G07020 839 / 0.0 UDP-glucosyl transferase 80A2, sterol glucosyltransferase, UDP-Glycosyltransferase superfamily protein (.1.2) Potri.014G178300 [exp] 603 / 0 AT3G07020 817 / 0.0 UDP-glucosyl transferase 80A2, sterol glucosyltransferase, UDP-Glycosyltransferase superfamily protein (.1.2) Potri.003G021100 [exp] 100 / 3e-22 AT5G24750 606 / 0.0 UDP-Glycosyltransferase superfamily protein (.1) Potri.006G022500 [exp] 46 / 7e-05 AT1G22400 514 / 3e-180 ARABIDOPSIS THALIANA UDP-GLUCOSYL TRANSFERASE 85A1, UDP-Glycosyltransferase superfamily protein (.1) Potri.006G022600 [exp] 46 / 7e-05 AT1G22400 515 / 0.0 ARABIDOPSIS THALIANA UDP-GLUCOSYL TRANSFERASE 85A1, UDP-Glycosyltransferase superfamily protein (.1) Potri.006G023101 [exp] 44 / 0.0002 AT1G22360 516 / 0.0 UDP-glucosyl transferase 85A2 (.1.2) Potri.006G022300 [exp] 42 / 0.001 AT1G22360 518 / 0.0 UDP-glucosyl transferase 85A2 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018878 [exp] 831 / 0 AT1G43620 849 / 0.0 TRANSPARENT TESTA 15, UDP-Glycosyltransferase superfamily protein (.1.2.3) Lus10028572 [exp] 816 / 0 AT1G43620 840 / 0.0 TRANSPARENT TESTA 15, UDP-Glycosyltransferase superfamily protein (.1.2.3) Lus10011882 [exp] 607 / 0 AT3G07020 885 / 0.0 UDP-glucosyl transferase 80A2, sterol glucosyltransferase, UDP-Glycosyltransferase superfamily protein (.1.2) Lus10020382 [exp] 585 / 0 AT3G07020 790 / 0.0 UDP-glucosyl transferase 80A2, sterol glucosyltransferase, UDP-Glycosyltransferase superfamily protein (.1.2) Lus10022815 [exp] 569 / 0 AT3G07020 742 / 0.0 UDP-glucosyl transferase 80A2, sterol glucosyltransferase, UDP-Glycosyltransferase superfamily protein (.1.2) Lus10024544 [exp] 561 / 0 AT3G07020 714 / 0.0 UDP-glucosyl transferase 80A2, sterol glucosyltransferase, UDP-Glycosyltransferase superfamily protein (.1.2) Lus10009556 [exp] 555 / 0 AT3G07020 707 / 0.0 UDP-glucosyl transferase 80A2, sterol glucosyltransferase, UDP-Glycosyltransferase superfamily protein (.1.2) Lus10011883 [exp] 515 / 3e-177 AT3G07020 648 / 0.0 UDP-glucosyl transferase 80A2, sterol glucosyltransferase, UDP-Glycosyltransferase superfamily protein (.1.2) Lus10020381 [exp] 441 / 6e-148 AT3G07020 568 / 0.0 UDP-glucosyl transferase 80A2, sterol glucosyltransferase, UDP-Glycosyltransferase superfamily protein (.1.2) Lus10009557 [exp] 219 / 4e-66 AT3G07020 261 / 6e-83 UDP-glucosyl transferase 80A2, sterol glucosyltransferase, UDP-Glycosyltransferase superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0113 [poplar] [flax] GT-B PF00201 [poplar] [flax] UDPGT UDP-glucoronosyl and UDP-glucosyl transferase CL0113 [poplar] [flax] GT-B PF03033 [poplar] [flax] Glyco_transf_28 Glycosyltransferase family 28 N-terminal domain
Representative CDS sequence Show only first row Show all	>Potri.005G193100.1 pacid=42803816 polypeptide=Potri.005G193100.1.p locus=Potri.005G193100 ID=Potri.005G193100.1.v4.1 annot-version=v4.1 ATGGTTAATAATAGATTTGATCATCCATTAAAGCATTCAGAAGAGGAAGGACGGGGCAGCAACTATCATCTGAATAAGAGTTTTGATCAGACCAGTGGAG GTGATGAATCAGTGACAGTTGCTTACGTATCTTCGGAGGAACAATCTGAAGCAGGTTCTTCTCAGGAAGCAGAGAAGCAGAAGACAAAGTCAGGGAAGCA GCCATTAGCTCTAGAGATTTTCAAATCAAAAAATTTGATTTTTCCTCCACCTCGAAGAGGCTTGAATCTGTGCATCAATGCTCCTGTTGACGATCACAGT CATCAGCTGTTTGATGATGATGATAATAATATTACATTCTACAGATCCAAGACGGAGAACAGGGCTTCAAGGTATGAGCTAAAATTGAATAGACTGTCAG AGCGTGAAAAGAAGAAACTAATCATAGAGCTAGTCAAGATACAAAACGACGGAACAGTTGAGGTTGATATAGATGAAAATGCTCCTGTTGCTTCAGAGTT GTTAGAGCTTCACTCAGTTGAAGGGGCGTCCTTTTATGTCAATGATAGCATTTCTTGTTCTAAGAAATCAATTCCAAGATTGAAAATTGCTATGCTAGTG GTTGGGACAAGAGGAGATGTCCAGCCCTTTCTAGCTATTGCAGAAAGACTTCAGGAATTTGGTCATCATGTTAGGCTGGCAACTCATGCTAACTTCAGCA GTTTTGTAAGATCAGCTGGTGTAGATTTTTATCCTTTGGGCGGTGATCCTCGGGTATTGGCAGAATATATGGCGAGAAACAAAGGTTTCATCCCATCTGC ACCAGGAGAAATATCCACACAGAGGAAGCAACTGAAGGCCATTATTGAATCTCTTCTTGCAGCATGCACAGAACCAGATATGGAAACTGGCGTGCCTTTC AAAGCCCAGGCAATTATTGCAAACCCTCCAGCATATGGACATGTACATGTTGCTGAAGCTCTTCATATACCAATTCACATTTTCTTCACAATGCCTTGGA CGCCAACATATGAATTTCCTCATCCTTTAGCACGTGTACCTCAAAGTGCTGGTTATTGGCTTTCATACATAGTTGTGGATTTACTGATATGGTGGGGAAT GAGAGGCTATATAAATGAATTCCGGAAAAGAAAGTTGAAGCTTCCACCGATCGCGTACTTCAGTACGTACCATGGATCAATATCTCATCTGCCAACAGGT TATATGTGGAGTTCCCATCTTGTGCCAAAGCCAAGTGACTGGGGGCCTTTAGTCGATGTTGTTGGTTATTGTTTGTTAAATCTTGGATCAAAATATGAAC CTAAAGAAGAGTTCCTGCAATGGATTCAGAAAGGAACTGAACCCATATATATTGGATTCGGGAGCATGCCTCTTGAAGATCCCAAGAATACTATGGACAT AATACTGGAGGCTTTGAAAGATACTGGACAAAGAGGAATAGTTGATCAAGGTTGGGGAGATCTTGGAAATTTTATGGAAGTACCCGACAGTGTCTTCCTT TTGAAGGATTGCCCTCATGATTGGTTGTTTCCTCAATGTGCTGCTGTGGTTCATCATGGTGGTGCCGGAACCACGGCAATGGGACTAAGAGCTGGGTGCC CGACAACTATAGTGCCATTCTTTGGCGATCAGTTCTTCTGGGGTGATCGGGTGCATAAAAAAGGACTAGGACCTGCACCGATACCAATAGCTAGGCTCAG TGCTGAGAGCCTTTCAAATGCAATAAGATTCATGCGAGAGCCTGAGGTGAAATCTCGAGCTGTGGAATTGGCTAAGTTGATAGAAAATGAAGATGGTGTT GGAGCTGCAGTTGATGCATTTCACCGACATTTGCCTCCCGAGCTACCCTTGCCTGCCTCATCTTCAGAGGACAATGAACAGCCGAACCCCCTGCAATGGT TTTTTATCCAAATTGAAAAGTGGTGCTGCCTATCCTGTTCATAA
AA sequence Show only first row Show all	>Potri.005G193100.1 pacid=42803816 polypeptide=Potri.005G193100.1.p locus=Potri.005G193100 ID=Potri.005G193100.1.v4.1 annot-version=v4.1 MVNNRFDHPLKHSEEEGRGSNYHLNKSFDQTSGGDESVTVAYVSSEEQSEAGSSQEAEKQKTKSGKQPLALEIFKSKNLIFPPPRRGLNLCINAPVDDHS HQLFDDDDNNITFYRSKTENRASRYELKLNRLSEREKKKLIIELVKIQNDGTVEVDIDENAPVASELLELHSVEGASFYVNDSISCSKKSIPRLKIAMLV VGTRGDVQPFLAIAERLQEFGHHVRLATHANFSSFVRSAGVDFYPLGGDPRVLAEYMARNKGFIPSAPGEISTQRKQLKAIIESLLAACTEPDMETGVPF KAQAIIANPPAYGHVHVAEALHIPIHIFFTMPWTPTYEFPHPLARVPQSAGYWLSYIVVDLLIWWGMRGYINEFRKRKLKLPPIAYFSTYHGSISHLPTG YMWSSHLVPKPSDWGPLVDVVGYCLLNLGSKYEPKEEFLQWIQKGTEPIYIGFGSMPLEDPKNTMDIILEALKDTGQRGIVDQGWGDLGNFMEVPDSVFL LKDCPHDWLFPQCAAVVHHGGAGTTAMGLRAGCPTTIVPFFGDQFFWGDRVHKKGLGPAPIPIARLSAESLSNAIRFMREPEVKSRAVELAKLIENEDGV GAAVDAFHRHLPPELPLPASSSEDNEQPNPLQWFFIQIEKWCCLSCS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G43620		UGT80B1, TT15	TRANSPARENT TESTA 15, UDP-Glyc...		Potri.005G193100 [exp]	0	1
AT4G15090	FAR1_related	FAR1	FAR-RED IMPAIRED RESPONSE 1, F...		Potri.003G110300 [exp]	1.41	0.8658
AT1G73970			unknown protein		Potri.008G016000 [exp]	5.19	0.8391
AT3G17450			hAT dimerisation domain-contai...		Potri.014G114100 [exp]	5.47	0.8468
AT2G26780			ARM repeat superfamily protein...		Potri.001G274500 [exp]	5.91	0.8204
AT5G51230	C2H2ZnF	AtEMF2, CYR1, V...	CYTOKININ RESISTANT 1, EMBRYON...		Potri.003G150450 [exp]	6.00	0.8017
AT5G42320			Zn-dependent exopeptidases sup...		Potri.005G250300 [exp]	9.89	0.7325
AT5G47690			binding (.1.2.3)		Potri.006G004750 [exp]	10.95	0.8387
AT2G29210			splicing factor PWI domain-con...		Potri.001G244600 [exp]	13.03	0.7728
AT1G24706		EMB2793, AtTHO2	EMBRYO DEFECTIVE 2793, THO2 (....		Potri.013G085000 [exp]	13.41	0.8382
AT4G27290			S-locus lectin protein kinase ...		Potri.011G125200 [exp]	14.76	0.7293

Compare expression of checked genes

Potri.005G193100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.