Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G43580 593 / 0 Sphingomyelin synthetase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G066900 [exp] 786 / 0 AT1G43580 575 / 0.0 Sphingomyelin synthetase family protein (.1) Potri.016G105700 [exp] 42 / 0.0006 AT3G54020 493 / 1e-177 Arabidopsis Inositol phosphorylceramide synthase 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028111 [exp] 620 / 0 AT1G43580 580 / 0.0 Sphingomyelin synthetase family protein (.1) Lus10042814 [exp] 615 / 0 AT1G43580 585 / 0.0 Sphingomyelin synthetase family protein (.1) Lus10027742 [exp] 44 / 0.0003 AT3G54020 477 / 6e-171 Arabidopsis Inositol phosphorylceramide synthase 1 (.1) Lus10035551 [exp] 43 / 0.0003 AT3G54020 490 / 2e-176 Arabidopsis Inositol phosphorylceramide synthase 1 (.1) Lus10017199 [exp] 42 / 0.0009 AT3G54020 462 / 7e-166 Arabidopsis Inositol phosphorylceramide synthase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0525 [poplar] [flax] pap2 PF14360 [poplar] [flax] PAP2_C PAP2 superfamily C-terminal
Representative CDS sequence Show only first row Show all	>Potri.005G193300.2 pacid=42804635 polypeptide=Potri.005G193300.2.p locus=Potri.005G193300 ID=Potri.005G193300.2.v4.1 annot-version=v4.1 ATGAGGCGGTGGGTCTCACCGCCTAAAACCACCGCCGGTTTAGGGCTGGCGGCAATTTCTTATGTAGTGGTGGACTATTTGCGCCACCTTTCCCCAACTT GGCACGAGCGTCTCCAGCCAGCATTATGGTCAATACTCGCTCTCATCGCCGTCTCACGTGTCCCTTTCTACAAGCACTGGTCGTCTGAGTTTAGAGCTGC CATTCCCTTTGTTGCTTCTATGCTGTTTATGCTCACTTGCCTTCTTTTCGAGGCTCTCTCTGTGCGCTTTGTCACTGCTGTTCTCGGTCTTGATTGGCAC AGTGATACATCTCCTCTACCTGACACCGGCCAGTGGTTGCTCCTTTCACTGAATGAAAAGCTTCCAGAGACATTGGTTGAGATTCTAAGAGCCCGTATTA TTGGACTGCATCATTTCCTGATGTTGTTTATGATGCTGGCTTTCTCCGTGCTATTTGACTCCGTAGAAGCTCCTGGACTTGGTCTTGGTGCAAGATACAT GTTCACTATGGCAATTGGCCGTCTTCTTCGGGCTATAACTTTTGTATCTACAATTCTACCATCAGCCCGGCCTTGGTGTGCTGCAGCTCGGTTTAGAGTC CCTCCATACCCTCATCACTGGGCTCAGAAATATTATGTTCCTTATGCTTCAGATGCAAATGCTATTCGTCAGATAATAAATCAGGATATAGCTTATGCTG ATACTGGGGAATACCTCGGTGATTACCAGCCAGATTGGGGTTCCATGAACTTCCTCATAAATTTCTTACGACCCACGCCTGCAGAAGGAGCATCATGGTA TAGTCTTCTGAAGAAAGCTGGAGGTGGCTGCAATGACCTCCTATACAGCGGCCATATGCTTGTTGCCGTGCTGACAGCTATGGCTTGGACGGAAGCTTAT GGAGGCTGTAGCTCAGCTTTCATATGGCTGCTTGTGATGCACAGTGCCCAGAGAGAAATTCGGGAACGCCACCATTACACAGTAGACTGTGTGGTGGCCA TTTATGTAGGCATCCTTCTCTGGAAGATGACTGGTTTTATCTGGCCAGCCAAGGATTCAATGAGAAGTAGAAGACTTGCAAAACTTGAGAGAATTCAAGG TAGACTAATCCAAGCAGCAAAAGACTCGGACATGGACGAAGTGAGGGAGCTTCTCAAGGAGGTTGAGTTGGGCACTCAGGAGAGCCAGAACAAAGGCCAC AGTAAGCATTTGTGGTTGTTTTCTTGTGCGACCATTTTCTCTGCACTAACAATTGTCCTTCTAGCCTTCACATGGACAAGCGACGGTTGA
AA sequence Show only first row Show all	>Potri.005G193300.2 pacid=42804635 polypeptide=Potri.005G193300.2.p locus=Potri.005G193300 ID=Potri.005G193300.2.v4.1 annot-version=v4.1 MRRWVSPPKTTAGLGLAAISYVVVDYLRHLSPTWHERLQPALWSILALIAVSRVPFYKHWSSEFRAAIPFVASMLFMLTCLLFEALSVRFVTAVLGLDWH SDTSPLPDTGQWLLLSLNEKLPETLVEILRARIIGLHHFLMLFMMLAFSVLFDSVEAPGLGLGARYMFTMAIGRLLRAITFVSTILPSARPWCAAARFRV PPYPHHWAQKYYVPYASDANAIRQIINQDIAYADTGEYLGDYQPDWGSMNFLINFLRPTPAEGASWYSLLKKAGGGCNDLLYSGHMLVAVLTAMAWTEAY GGCSSAFIWLLVMHSAQREIRERHHYTVDCVVAIYVGILLWKMTGFIWPAKDSMRSRRLAKLERIQGRLIQAAKDSDMDEVRELLKEVELGTQESQNKGH SKHLWLFSCATIFSALTIVLLAFTWTSDG

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G43580			Sphingomyelin synthetase famil...		Potri.005G193300 [exp]	0	1
AT5G18280		ATAPY2	apyrase 2 (.1.2)		Potri.019G031000 [exp]	3.16	0.8848	Pt-APY1.4
AT2G40540		ATKUP2, ATKT2, ...	potassium transporter 2 (.1.2)		Potri.015G034200 [exp]	3.74	0.8689
AT3G06720		IMPA1, IMPA-1, ...	importin alpha isoform 1 (.1.2...		Potri.002G199600 [exp]	7.48	0.8564
AT3G09735			S1FA-like DNA-binding protein ...		Potri.006G130200 [exp]	7.74	0.8544	S1FA3.1
AT5G42570			B-cell receptor-associated 31-...		Potri.011G007200 [exp]	8.48	0.8836
AT2G26260		AT3BETAHSD/D2	3beta-hydroxysteroid-dehydroge...		Potri.006G218400 [exp]	8.66	0.8799
AT3G13772		AtTMN7	transmembrane nine 7 (.1)		Potri.003G038700 [exp]	9.79	0.8775
AT5G62580			ARM repeat superfamily protein...		Potri.012G074400 [exp]	12.96	0.8471
AT5G58590		RANBP1	RAN binding protein 1 (.1)		Potri.001G278900 [exp]	15.58	0.8655	Pt-SIRANBP.1
AT3G52300		ATPQ	"ATP synthase D chain, mitocho...		Potri.008G043800 [exp]	17.94	0.8457

Compare expression of checked genes

Potri.005G193300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.