Plant FIBer expression Database

SDG954 (Potri.005G193500) [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol SDG954
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G43245 262 / 2e-79 SET domain-containing protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.005G193701
[exp]
603 / 0 AT1G43245 120 / 3e-30 SET domain-containing protein (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10018874
[exp]
333 / 4e-106 AT1G43245 347 / 1e-112 SET domain-containing protein (.1)
Lus10028568
[exp]
273 / 2e-83 AT1G43245 308 / 8e-98 SET domain-containing protein (.1)
PFAM info
Representative CDS sequence
>Potri.005G193500.1 pacid=42802606 polypeptide=Potri.005G193500.1.p locus=Potri.005G193500 ID=Potri.005G193500.1.v4.1 annot-version=v4.1
ATGGAGATGAGAGCCGGTGAAGAGGACATAGAAATTGGCGAGGACATTACCCCATCGGTGATCCCTCTCTCTTACGCTCTTCACGATTCTTTCATTCACT
CTCACTGCTCCTCTTGCTTCTCCCGTCTCCCTAGTGCTAATTTTACCCAGCATCACCATGTCCCCACGCTACTCTACTGTTCCTCTATCTGCTCCTCCTC
CCACTTCTCCCCCGCCGAACTCCACCTCCTCCACTCTCCCCCCTCCTCCGACCTCCGTGCTGCCCTCCGCCTACTCCCTCTCTCTCTCCCCTCCTCCTCC
ACCAACAGAATTTGTGGCTTATTGACGAACCGAGAGAAATTGATGGCCGACGAAGAGATTTCAGCTCACGTAAGATATGGAGCGAAGGCCATAGCAGCTG
CGAGAAGGATTGAGATGGTTGAAAACGAAAAAAATGACGCTGTTTTGTTGGAGGCTGCGTTGTGCTTGGTGCTAACGAACGCCGTTGAGGTACACGATAA
CGAAGGGCGCTCCATCGGGATTGCTGTTTATGGCCCCAATTTCTCGTGGATTAATCACAGTTGTTCTCCCAATGCTTGTTATCGATCTATTATTTCTCCT
CCTGATAATGTGTTGCCGTTCAGCGATGAGTCGAGGTTACGAATTCTTCCTGCTGGCACCGAAAGTGATAATGGTGTGCATAACAACATTGAATTCTCAA
AAGGATGTAGTGGAAGTGGACCAAGAGTGATTGTGAGGAGTATTAAGAGGATTAAGAGAGGTGAGGAGGTGACTGTGGCATACACAGACTTGTTGCAGCC
TAAGGAAATAAGGCGGTCAGAATTGTGGGCCAAGTATCGTTTTATTTGTTGCTGTACACGATGCATTGCATCACCCCCGTCTTATGTAGATCATGTTCTG
CAGGAAATTTCTGCATCAAATCTGGCCTCTTCGAGCTTAAGTTCTGAACTCAGCTTTTATAGGGATGAAGCAACTAGAAAGCTGACAGATTATGTAGATG
AAGTTACAGCCGAGTATCTTGCTGTTGGTGATCCTGAATCTTGCTGCAAGAAGCTTGAGAACATGCTGATCACTGGCCTCCTTGATGAGCAGTTAGAGGT
CAGAGAAGGAAAATCACAGTTGAACTTCAGGTTGCATGCCCTGCACCATCTTGCTCTGAACACATATACCGTTCTGGCTTCTGCTTATAAAATACGAGCA
AGTGACTTATTTTCTCTGCATTCTGAGGTGGGTGGACTTCCATGGGAAGCTTTGAGCATGTCCAGAATCAGTGCAGCATACTCATTGTTGCTTGCAACTG
CAACTTACCATCTGTTTTGTTTTGAATCTTCATTGCTTGTATCTGTTGCAAACTTCTGGACAAGTGCAGGGGAGTCCTTATTAGCTCTTGCTAAAAGCTC
AGCATGGGATTCTCTTGGAAAATGTGGGTTTCCTGTCTTGAATCTTTCTCCTCTAGCTAAGCACAAATGCTCCAAGTGCTCATTGCTTGAAAGCTTTGAA
GTAAATTTATCATTTGGTCAAGATCACATCCGAAAGGCAGGTTTTGACAGCGTGTCGAGCAGGTTTCTTGATTGCATTGGTAGTTTGTTGCAAGAAGTTT
GGGGTTTTCTGATTCAAGGCGACCGCTACTTGAAAATGTTTAAAGATCCCACAGATTTCAGTTGGCTTGGGAAATCCTTGGACATTTGGGATTTTGATGC
TGAATTAACCCATAACGATGTGGATTTCAATTGTTGGACCAACAAAAGTGTTTCTGGAATTGAGGCTCTGGGGTACACCGACCAATGGAGAATAAATACT
TTTCAGCTTGGTGTTCATTGCTTGCTCTATGGAGGATTTTTAGCTGGCATATGTTATGGTCCTCATTCTCATTGGAGTAGTCACATTCGGAGTGCTCTAA
ATTATGAGGGGAAATAA
AA sequence
>Potri.005G193500.1 pacid=42802606 polypeptide=Potri.005G193500.1.p locus=Potri.005G193500 ID=Potri.005G193500.1.v4.1 annot-version=v4.1
MEMRAGEEDIEIGEDITPSVIPLSYALHDSFIHSHCSSCFSRLPSANFTQHHHVPTLLYCSSICSSSHFSPAELHLLHSPPSSDLRAALRLLPLSLPSSS
TNRICGLLTNREKLMADEEISAHVRYGAKAIAAARRIEMVENEKNDAVLLEAALCLVLTNAVEVHDNEGRSIGIAVYGPNFSWINHSCSPNACYRSIISP
PDNVLPFSDESRLRILPAGTESDNGVHNNIEFSKGCSGSGPRVIVRSIKRIKRGEEVTVAYTDLLQPKEIRRSELWAKYRFICCCTRCIASPPSYVDHVL
QEISASNLASSSLSSELSFYRDEATRKLTDYVDEVTAEYLAVGDPESCCKKLENMLITGLLDEQLEVREGKSQLNFRLHALHHLALNTYTVLASAYKIRA
SDLFSLHSEVGGLPWEALSMSRISAAYSLLLATATYHLFCFESSLLVSVANFWTSAGESLLALAKSSAWDSLGKCGFPVLNLSPLAKHKCSKCSLLESFE
VNLSFGQDHIRKAGFDSVSSRFLDCIGSLLQEVWGFLIQGDRYLKMFKDPTDFSWLGKSLDIWDFDAELTHNDVDFNCWTNKSVSGIEALGYTDQWRINT
FQLGVHCLLYGGFLAGICYGPHSHWSSHIRSALNYEGK

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT1G43245 SET domain-containing protein ... Potri.005G193500
[exp]
0 1 SDG954
AT1G05670 Pentatricopeptide repeat (PPR-... Potri.019G075900
[exp]
3.31 0.8119
AT4G20310 Peptidase M50 family protein (... Potri.003G157800
[exp]
4.24 0.8076
AT3G21215 RNA-binding (RRM/RBD/RNP motif... Potri.010G249700
[exp]
7.14 0.7676
AT4G18710 DWF12, UCU1, BI... ULTRACURVATA 1, DWARF 12, BRAS... Potri.011G068600
[exp]
8.12 0.7378 GSK1.1
AT5G25270 Ubiquitin-like superfamily pro... Potri.006G059700
[exp]
9.38 0.7484
AT1G78680 ATGGH2 gamma-glutamyl hydrolase 2 (.1... Potri.001G387100
[exp]
14.49 0.7163
AT3G20420 RTL2, ATRTL2 RNASEIII-LIKE 2, RNAse THREE-l... Potri.011G086700
[exp]
14.49 0.6881
AT1G55040 zinc finger (Ran-binding) fami... Potri.005G033000
[exp]
17.34 0.7501
AT1G12700 RPF1 RNA processing factor 1, ATP b... Potri.005G050400
[exp]
19.07 0.7308
AT2G24030 zinc ion binding;nucleic acid ... Potri.006G182601
[exp]
21.90 0.7369

Potri.005G193500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.