Plant FIBer expression Database

Potri.005G193600 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.005G193800
[exp]
89 / 1e-23 ND /
Potri.005G193901
[exp]
59 / 1e-11 ND /
Flax homologues

No hit found
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF02496 ABA_WDS ABA/WDS induced protein
Representative CDS sequence
>Potri.005G193600.1 pacid=42805623 polypeptide=Potri.005G193600.1.p locus=Potri.005G193600 ID=Potri.005G193600.1.v4.1 annot-version=v4.1
ATGGCTGAAGAGAAGCAGCACCATGGCCTCTTCCACCACCACAAGAGCGAGGAGAAACCAGATGAGGCCGGTGTCTACTCTGAGACCGCTGAGTATTCAG
AGACTGCCACATGTTATGATGCTCCACCTCCTGCTGTCCCAGATGTTGATTACAGAAAAGAAGAGAAGCATCACAAGCATCTTGAGCACGTTGGTGAGCT
TGGAACTGCTGCCGCTGGTGCTTTTTCCATGCATGAGAAGCACGAGTCAAAGAAAGACCCAGAGCATGCACACAGGCACAAGATAGAGGAGGAGATTGCC
GCGGCAGCTGCAGTTGGATCCGGTGGATTTGTATTCCATGAGCATCATGACAAGAAAGAAACCAAGAAAGAGGAAGAAGAGGCTAACGGAAAGAAGCACC
ACCGCTTCTAA
AA sequence
>Potri.005G193600.1 pacid=42805623 polypeptide=Potri.005G193600.1.p locus=Potri.005G193600 ID=Potri.005G193600.1.v4.1 annot-version=v4.1
MAEEKQHHGLFHHHKSEEKPDEAGVYSETAEYSETATCYDAPPPAVPDVDYRKEEKHHKHLEHVGELGTAAAGAFSMHEKHESKKDPEHAHRHKIEEEIA
AAAAVGSGGFVFHEHHDKKETKKEEEEANGKKHHRF

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
Potri.005G193600
[exp]
0 1
AT1G74780 Nodulin-like / Major Facilitat... Potri.012G072101
[exp]
2.82 0.9191
AT3G60530 GATA GATA4 GATA transcription factor 4 (.... Potri.002G142800
[exp]
4.24 0.9047
AT5G05340 Peroxidase superfamily protein... Potri.014G143200
[exp]
4.69 0.9289 Pt-PRX1.11
AT3G16360 AHP4 HPT phosphotransmitter 4 (.1.2... Potri.006G236300
[exp]
5.00 0.9170
AT2G29090 CYP707A2 "cytochrome P450, family 707, ... Potri.001G242600
[exp]
5.65 0.8917
AT4G31500 SUR2, RNT1, RED... SUPERROOT 2, RUNT 1, RED ELONG... Potri.005G236102
[exp]
6.63 0.8838
AT5G52390 PAR1 protein (.1) Potri.015G144800
[exp]
6.70 0.8864
AT1G67540 unknown protein Potri.008G177300
[exp]
17.88 0.8236
AT2G30390 FC2, FC-II, ATF... ferrochelatase 2 (.1.2) Potri.004G138400
[exp]
18.33 0.7709
AT5G45670 GDSL-like Lipase/Acylhydrolase... Potri.011G076500
[exp]
19.44 0.8653

Potri.005G193600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.