Plant FIBer expression Database

ARP1.1 (Potri.005G194500) [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol ARP1.1
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G43170 686 / 0 RPL3A, ARP1, EMB2207 embryo defective 2207, ribosomal protein 1 (.1.2.3.4.5.6.7.8.9)
AT1G61580 679 / 0 RPL3B, ARP2 ARABIDOPSIS RIBOSOMAL PROTEIN 2, R-protein L3 B (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.002G066200
[exp]
759 / 0 AT1G43170 701 / 0.0 embryo defective 2207, ribosomal protein 1 (.1.2.3.4.5.6.7.8.9)
Potri.003G008300
[exp]
645 / 0 AT1G61580 626 / 0.0 ARABIDOPSIS RIBOSOMAL PROTEIN 2, R-protein L3 B (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10035786
[exp]
679 / 0 AT1G61580 683 / 0.0 ARABIDOPSIS RIBOSOMAL PROTEIN 2, R-protein L3 B (.1)
Lus10006181
[exp]
675 / 0 AT1G43170 679 / 0.0 embryo defective 2207, ribosomal protein 1 (.1.2.3.4.5.6.7.8.9)
Lus10041041
[exp]
618 / 0 AT4G10120 1412 / 0.0 Sucrose-phosphate synthase family protein (.1.2)
Lus10037360
[exp]
593 / 0 AT1G61580 612 / 0.0 ARABIDOPSIS RIBOSOMAL PROTEIN 2, R-protein L3 B (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0575 EFTPs PF00297 Ribosomal_L3 Ribosomal protein L3
Representative CDS sequence
>Potri.005G194500.1 pacid=42805366 polypeptide=Potri.005G194500.1.p locus=Potri.005G194500 ID=Potri.005G194500.1.v4.1 annot-version=v4.1
ATGTCTCACAGGAAGTTTGAGCACCCTAGACATGGTTCCCTTGGATTTCTTCCAAGGAAGCGAGCTGCTCGTCACAGAGGAAAAGTGAAGTCTTTCCCCA
AGGATGACCCTACCAAGCCTTGCAAGCTTACTTCCTTTTTGGGTTACAAGGCTGGCATGACACACATTGTCAGAGAGGTCGAAAAACCAGGATCCAAGCT
TCACAAGAAGGAGACCTGTGAGGCTGTAACAATCGTTGAGACACCTCCAATGGTGATTGTTGGAGTTGTGGGTTACTTGAAAACACCATCTGGCCTCCGA
ACTCTGAACACCGTTTGGGCTCAGCATTTGAGCGAGGAGGTCAAGCGAAGGTTCTACAAGAACTGGTGCAAGTCCAAGAAGAAGGCGTTCGCCAAATACT
CAAAGCAGTATGAGACAGATGAAGGGAAGAAGAGCATCCAATCACAGCTTGAGAAGTTGAAGAAATATGCAACTGTTATTCGTGTTTTGGCCCACACTCA
GATCAGAAAGATGAAGGGATTGAAGCAGAAGAAAGCTCACTTGATGGAGATCCAGGTCAATGGTGGGACAATTGCTCAGAAGGTGGATTTTGCTTATGGT
TTCTTTGAGAAGCAAGTCCCAATAGATGCTGTTTTCCAGAAGGATGAAATGATTGATGTTATTGGTGTCACAAAGGGTAAGGGTTATGAAGGTGTTGTCA
CTCGTTGGGGTGTCACTCGCCTGCCTCGTAAGACCCATAGGGGTCTTCGTAAGGTGGCTTGTATCGGCGCCTGGCACCCTGCAAGAGTCTCATTCACTGT
TGCCAGGGCTGGTCAGAATGGATATCACCACCGTACTGAATTGAACAAGAAGATCTACAAGGTTGGCAAGGTGGGCCAGGAGACACACACTGCCATAACC
GAGTATGACAGGACCGAAAAGGACATCACTCCATTGGGTGGTTTCCCTCACTATGGTGTGGTGAAGGACGACTATCTGATGATCAAGGGATGCTGCGTTG
GACCTAAGAAGAGGGTGGTTACACTCCGTCAATCCCTACTCAAACAGACATCTCGATTGGCTCTTGAGGAAATCAAACTCAAGTTTGTGGACACGTCCTC
GAAGTTTGGACATGGTCGCTTCCAGACAACACAGGAGAAACAGAAATTCTATGGACGCCTCAAGGCCTAA
AA sequence
>Potri.005G194500.1 pacid=42805366 polypeptide=Potri.005G194500.1.p locus=Potri.005G194500 ID=Potri.005G194500.1.v4.1 annot-version=v4.1
MSHRKFEHPRHGSLGFLPRKRAARHRGKVKSFPKDDPTKPCKLTSFLGYKAGMTHIVREVEKPGSKLHKKETCEAVTIVETPPMVIVGVVGYLKTPSGLR
TLNTVWAQHLSEEVKRRFYKNWCKSKKKAFAKYSKQYETDEGKKSIQSQLEKLKKYATVIRVLAHTQIRKMKGLKQKKAHLMEIQVNGGTIAQKVDFAYG
FFEKQVPIDAVFQKDEMIDVIGVTKGKGYEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTELNKKIYKVGKVGQETHTAIT
EYDRTEKDITPLGGFPHYGVVKDDYLMIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKLKFVDTSSKFGHGRFQTTQEKQKFYGRLKA

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT1G43170 RPL3A, ARP1, EM... embryo defective 2207, ribosom... Potri.005G194500
[exp]
0 1 ARP1.1
AT5G28060 Ribosomal protein S24e family ... Potri.008G152500
[exp]
1.73 0.9781
AT1G67430 Ribosomal protein L22p/L17e fa... Potri.015G094400
[exp]
2.00 0.9841 RPL17.2
AT4G16720 Ribosomal protein L23/L15e fam... Potri.001G156100
[exp]
2.00 0.9786 RPL15.3
AT5G58420 Ribosomal protein S4 (RPS4A) f... Potri.006G103700
[exp]
4.47 0.9657
AT5G10360 RPS6B, EMB3010 Ribosomal protein small subuni... Potri.007G096300
[exp]
4.89 0.9571
AT4G14320 Zinc-binding ribosomal protein... Potri.005G092500
[exp]
4.89 0.9750
AT4G34555 Ribosomal protein S25 family p... Potri.008G020000
[exp]
5.47 0.9635
AT1G72370 AP40, RPSAA, RP... 40s ribosomal protein SA (.1.2... Potri.003G071200
[exp]
5.65 0.9660
AT3G03920 H/ACA ribonucleoprotein comple... Potri.013G058400
[exp]
6.48 0.9481
AT3G04840 Ribosomal protein S3Ae (.1) Potri.008G156300
[exp]
6.70 0.9748 RS3.2

Potri.005G194500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.