Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G20220 194 / 8e-61 Alba DNA/RNA-binding protein (.1) AT1G76010 192 / 9e-60 Alba DNA/RNA-binding protein (.1) AT3G07030 157 / 1e-45 Alba DNA/RNA-binding protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G066100 [exp] 255 / 7e-85 AT1G20220 200 / 1e-62 Alba DNA/RNA-binding protein (.1) Potri.002G017600 [exp] 200 / 2e-63 AT1G76010 216 / 3e-68 Alba DNA/RNA-binding protein (.1) Potri.005G244300 [exp] 197 / 8e-63 AT1G76010 221 / 7e-71 Alba DNA/RNA-binding protein (.1) Potri.002G240601 [exp] 140 / 3e-40 AT3G07030 199 / 3e-61 Alba DNA/RNA-binding protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021844 [exp] 210 / 1e-66 AT1G76010 280 / 1e-92 Alba DNA/RNA-binding protein (.1) Lus10034549 [exp] 207 / 2e-65 AT1G76010 276 / 5e-91 Alba DNA/RNA-binding protein (.1) Lus10017255 [exp] 201 / 5e-64 AT1G76010 251 / 2e-82 Alba DNA/RNA-binding protein (.1) Lus10005615 [exp] 198 / 7e-63 AT1G76010 264 / 3e-87 Alba DNA/RNA-binding protein (.1) Lus10022807 [exp] 149 / 1e-42 AT3G07030 241 / 4e-76 Alba DNA/RNA-binding protein (.1) Lus10011874 [exp] 150 / 1e-41 AT3G07030 239 / 2e-73 Alba DNA/RNA-binding protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0441 [poplar] [flax] AlbA PF01918 [poplar] [flax] Alba Alba
Representative CDS sequence Show only first row Show all	>Potri.005G194600.1 pacid=42805322 polypeptide=Potri.005G194600.1.p locus=Potri.005G194600 ID=Potri.005G194600.1.v4.1 annot-version=v4.1 ATGGATCGGTACCAGAGGGTAGAGAAGCCAAGAACCGAAACACCGATTAATGAGAATGAGATTCGCATCACTACTCAAGGACGAATGAGGAACTACATTA CTTATGCCACTACGCTCTTTCTGGAGAAAGGATCTGATGGAATCTCTCTCAAGGCCATGGGCAGAGCCATAAACAAGACTGTGATGATTGCTGAATTGAT TAAGAGAAGGATTGCTGGTCTTCATCAGAATACATCCATTGGTTCTACTGATATAACTGACACGTGGGAGCCACTAGAGGAGGGTCTTCTCCCCTTGGAA ACCACTCGTCATGTGTCGGTGATAACAATTACTCTATCCAAGAAGGAACTGGATACATCCTCCACAGGCTACCAATCACCTATTCCAGCTGATCAAGTGA AACCATTGGCTGAATATGATTACGAAGGAGAGGGGGGCTCTCCTCGTAGGCATGGGAGAGGGCGTGGTGGTCGAGGAATGGCAAGAGGTAGAGGAAATAC TAGTAATGGAGTGGAGTACAATGGAGATGGTGGCTGGGATGGTGGGCGTGGATATGGTGGCAGGGGGAGAGGTCGTGGAAGAGGACGGGGTTATCGTGGT CGTGGAAGAGGTTATGGTGGTGGATATATGCCACAACAGTCAGGTGGCTATAACGACTATGGTGGCGGAGCATTTGTTGGCCAGGGCCGTGGGAGAGGAC GAGGCAGGGGCAGGGGTCGTGGGCGTGGCCGGGGTTTCAGACCAGATGGCCCAGCCCAGGCAGCTGAGTGA
AA sequence Show only first row Show all	>Potri.005G194600.1 pacid=42805322 polypeptide=Potri.005G194600.1.p locus=Potri.005G194600 ID=Potri.005G194600.1.v4.1 annot-version=v4.1 MDRYQRVEKPRTETPINENEIRITTQGRMRNYITYATTLFLEKGSDGISLKAMGRAINKTVMIAELIKRRIAGLHQNTSIGSTDITDTWEPLEEGLLPLE TTRHVSVITITLSKKELDTSSTGYQSPIPADQVKPLAEYDYEGEGGSPRRHGRGRGGRGMARGRGNTSNGVEYNGDGGWDGGRGYGGRGRGRGRGRGYRG RGRGYGGGYMPQQSGGYNDYGGGAFVGQGRGRGRGRGRGRGRGRGFRPDGPAQAAE

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G20220			Alba DNA/RNA-binding protein (...		Potri.005G194600 [exp]	0	1
AT2G28600			P-loop containing nucleoside t...		Potri.010G234000 [exp]	1.00	0.8670
AT3G57000			nucleolar essential protein-re...		Potri.006G040600 [exp]	3.46	0.8241
AT3G13940			DNA binding;DNA-directed RNA p...		Potri.001G198600 [exp]	3.74	0.8316
AT1G20220			Alba DNA/RNA-binding protein (...		Potri.002G066100 [exp]	5.47	0.7956
AT2G34040			Apoptosis inhibitory protein 5...		Potri.011G062500 [exp]	6.00	0.7650
AT5G06360			Ribosomal protein S8e family p...		Potri.006G203400 [exp]	7.00	0.7848
AT1G60080			3'-5'-exoribonuclease family p...		Potri.006G051200 [exp]	8.48	0.7964
AT2G43110			unknown protein		Potri.014G150100 [exp]	9.53	0.7626
AT1G64880			Ribosomal protein S5 family pr...		Potri.013G076200 [exp]	9.79	0.7851
AT3G63090			Ubiquitin carboxyl-terminal hy...		Potri.002G220000 [exp]	14.42	0.7563

Compare expression of checked genes

Potri.005G194600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.