Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G43190 744 / 0 PTB3 polypyrimidine tract-binding protein 3 (.1.2.3) AT3G01150 162 / 3e-45 ATPTB1, PTB polypyrimidine tract-binding protein 1 (.1.2) AT5G53180 149 / 3e-40 ATPTB2 polypyrimidine tract-binding protein 2 (.1.2) AT2G42890 50 / 3e-06 AML2, MEI2 MEI2-like 2 (.1.2.3) AT3G19130 48 / 1e-05 ATRBP47B RNA-binding protein 47B (.1) AT1G11650 46 / 4e-05 ATRBP45B RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) AT2G43410 42 / 0.0006 FPA RNA binding (.1.2.3.4)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G066000 [exp] 822 / 0 AT1G43190 726 / 0.0 polypyrimidine tract-binding protein 3 (.1.2.3) Potri.004G123300 [exp] 158 / 3e-43 AT3G01150 636 / 0.0 polypyrimidine tract-binding protein 1 (.1.2) Potri.017G085400 [exp] 154 / 1e-41 AT3G01150 607 / 0.0 polypyrimidine tract-binding protein 1 (.1.2) Potri.012G029300 [exp] 145 / 5e-39 AT5G53180 603 / 0.0 polypyrimidine tract-binding protein 2 (.1.2) Potri.015G020800 [exp] 144 / 2e-38 AT5G53180 581 / 0.0 polypyrimidine tract-binding protein 2 (.1.2) Potri.007G131100 [exp] 55 / 1e-07 AT2G43410 633 / 0.0 RNA binding (.1.2.3.4) Potri.017G026600 [exp] 52 / 7e-07 AT2G43410 659 / 0.0 RNA binding (.1.2.3.4) Potri.014G171900 [exp] 49 / 4e-06 AT4G12640 698 / 0.0 RNA recognition motif (RRM)-containing protein (.1) Potri.012G107900 [exp] 44 / 0.0002 AT1G29400 288 / 2e-88 MEI2-like protein 5 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028566 [exp] 655 / 0 AT1G43190 678 / 0.0 polypyrimidine tract-binding protein 3 (.1.2.3) Lus10018871 [exp] 649 / 0 AT1G43190 680 / 0.0 polypyrimidine tract-binding protein 3 (.1.2.3) Lus10005233 [exp] 148 / 1e-39 AT3G01150 598 / 0.0 polypyrimidine tract-binding protein 1 (.1.2) Lus10014931 [exp] 134 / 3e-34 AT5G53180 617 / 0.0 polypyrimidine tract-binding protein 2 (.1.2) Lus10038820 [exp] 128 / 7e-33 AT5G53180 567 / 0.0 polypyrimidine tract-binding protein 2 (.1.2) Lus10030688 [exp] 127 / 2e-32 AT3G01150 557 / 0.0 polypyrimidine tract-binding protein 1 (.1.2) Lus10043204 [exp] 51 / 2e-06 AT5G61960 728 / 0.0 MEI2-like protein 1 (.1.2) Lus10032537 [exp] 47 / 3e-05 AT5G61960 664 / 0.0 MEI2-like protein 1 (.1.2) Lus10019359 [exp] 47 / 3e-05 AT2G43410 624 / 0.0 RNA binding (.1.2.3.4)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0221 [poplar] [flax] RRM PF13893 [poplar] [flax] RRM_5 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Representative CDS sequence Show only first row Show all	>Potri.005G194700.4 pacid=42804427 polypeptide=Potri.005G194700.4.p locus=Potri.005G194700 ID=Potri.005G194700.4.v4.1 annot-version=v4.1 ATGACCGAGCCTTCCAAAGTTATCCATGTTCGCAACGTGGGGCATGAGATTTCTGAAAATGACTTGCTTCAGCTGTTCCAGCCATTTGGGGTTATAACGA AGCTTGTTATGCTTCGTGCTAAAAATCAGGCTCTCCTTCAAATGCAAGATGTTCCTTCAGCCATCAATGCTCTTCAATACTATACAGATGTTCAGCCAAC TATAAGGGGAAGGAATGTTTATATTCAATTCTCATCGCATCAAGAACTGACTACAATGGATCAAAATACTCAAGGGCGAGGAGAAGAGCCAAATCGAATT CTGTTAATTACCATCCATCACATGCAATATCCTATTACAGTGGACGTGCTGCATCAAGTTTTTTCCCCCCATGGATTTGTGGAGAAGATGGTCACATTTC AGAAGTCAGCTGGTTTTCAAGCCCTTATTCAATACCAGTCACGCCAGAGTGCTGTTCAGGCTAGGACTTCTCTTCAGGGGCGCAATATCTATGATGGCTG CTGTCAGCTGGACATTCAGTTTTCAAACCTGGATGAGTTGCAAGTGAACTACAACAATGACAGCTCAAGGGATTTCACTAATCCTAACCTGCCTTCAGAA CAGAAAGCCAGATCTTCCCAACAGCCATCATATGGCGATGTAGTTGGATATCCTCAGATGCCCAATGCAGCTGCAATTGCTGCTGCCTTTGGTGGAGGTT TGCCTCCTGGAATTAGTGGGACAAATGATAGGTGCACAATTCTTGTCTCCAATTTAAATCCTGATAGAATAGATGAGGACAAGCTTTTCAACCTGTTTTC TCTCTATGGAAACATAGTGCGGATTAAGCTTCTTCGCAACAAGCCTGATCATGCACTTGTTCAGATGGGGGATGGTTTCCAAGCTGAATTGGCAGTACAT TTTTTGAAGGGTGCCATGCTTTTTGGAAAGCGAATGGAGGTCAACTTTTCGAAGCATCCAAACATAACTCAAGGTGCTGATACGCACGAGTACATGCACT CTAATCTGAATCGCTTCAACCGTAATGCTGCAAAGAACTACCGATACTGCTGTTCACCAACAAAGATGATTCATCTTTCCACTTTACCTCAGGTCATCAC TGAGGATGAGATTGTGAGTCTTGTAGAGGAGCATGGCACCGTTGTGAACACCAAGCTCTTTGAGATGAATGGGAAGAAGCAGGCGCTTGTTCTGTTTGAA ACCGAGGAGGAGGCCACAGAAGCCCTCGTGTGCAAGCATGCTACTTCACTTGCTGGGTCGATTGTCCGAATCTCATTCTCCCAGCTACAGTCCATTAGAG AAAACCAATAA
AA sequence Show only first row Show all	>Potri.005G194700.4 pacid=42804427 polypeptide=Potri.005G194700.4.p locus=Potri.005G194700 ID=Potri.005G194700.4.v4.1 annot-version=v4.1 MTEPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQYYTDVQPTIRGRNVYIQFSSHQELTTMDQNTQGRGEEPNRI LLITIHHMQYPITVDVLHQVFSPHGFVEKMVTFQKSAGFQALIQYQSRQSAVQARTSLQGRNIYDGCCQLDIQFSNLDELQVNYNNDSSRDFTNPNLPSE QKARSSQQPSYGDVVGYPQMPNAAAIAAAFGGGLPPGISGTNDRCTILVSNLNPDRIDEDKLFNLFSLYGNIVRIKLLRNKPDHALVQMGDGFQAELAVH FLKGAMLFGKRMEVNFSKHPNITQGADTHEYMHSNLNRFNRNAAKNYRYCCSPTKMIHLSTLPQVITEDEIVSLVEEHGTVVNTKLFEMNGKKQALVLFE TEEEATEALVCKHATSLAGSIVRISFSQLQSIRENQ

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G43190		PTB3	polypyrimidine tract-binding p...		Potri.005G194700 [exp]	0	1
AT4G39740		HCC2	homologue of copper chaperone ...		Potri.007G091300 [exp]	6.78	0.7554
AT2G34560			P-loop containing nucleoside t...		Potri.011G085200 [exp]	6.92	0.7084
AT1G71340		AtGDPD4	glycerophosphodiester phosphod...		Potri.013G095300 [exp]	13.19	0.7275
AT3G03890			FMN binding (.1.2)		Potri.013G057700 [exp]	14.79	0.7167
AT5G62575		SDH7B, SDH7	succinate dehydrogenase 7B, su...		Potri.012G077101 [exp]	29.15	0.7131
AT5G62200			Embryo-specific protein 3, (AT...		Potri.001G193500 [exp]	48.00	0.6419
AT5G18420			unknown protein		Potri.017G122600 [exp]	76.15	0.6368
AT2G19450		RDS1, DGAT1, AT...	TRIACYLGLYCEROL BIOSYNTHESIS D...		Potri.006G147600 [exp]	77.76	0.6507
AT3G46630			Protein of unknown function (D...		Potri.014G023200 [exp]	79.39	0.6540
AT1G02840		ATSRP34, SR1, S...	Serine/Arginine-Rich Protein S...		Potri.014G129900 [exp]	81.06	0.6342

Compare expression of checked genes

Potri.005G194700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.