Plant FIBer expression Database

Potri.005G194800 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G76730 516 / 0 NagB/RpiA/CoA transferase-like superfamily protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10028565
[exp]
483 / 7e-173 AT1G76730 479 / 1e-171 NagB/RpiA/CoA transferase-like superfamily protein (.1)
Lus10018870
[exp]
317 / 2e-107 AT1G76730 320 / 3e-109 NagB/RpiA/CoA transferase-like superfamily protein (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0246 ISOCOT_Fold PF01812 5-FTHF_cyc-lig 5-formyltetrahydrofolate cyclo-ligase family
Representative CDS sequence
>Potri.005G194800.1 pacid=42804032 polypeptide=Potri.005G194800.1.p locus=Potri.005G194800 ID=Potri.005G194800.1.v4.1 annot-version=v4.1
ATGGATTCAACTCTGACTCGAATAGCAGCTCCACTTCCGCTCACACACACACTCCTCTTTAACTACCCCCATTCTTCTCCATCTTTAATTTGTTTCTTCT
CGAGGAGAACTCATAGCAAGAGATTGTTCAATTCAAATTGCAAGCTGGGAAGTTCTAAGCGAAATGCCCACGACGATAACGTCGTTTTGGATGAAAAAGC
TTACGAGGCCGAGAGGTTAAGACTTGATGCACAGGCAAGAGACTCAATGGCCGAGACTTCTAAAAGAGAGATGGAGACGAGTTCAGAGGATGACCCCAAA
GCTTGGAAATGGGTCATCCGAAAGAGAATTTGGGATTTGATGGAGGCCCGAAATATTGCTCAGAACCCCAGACCTGTTCACCACCGGATCCCCAATTTCG
TTGGCGCCTCAGCTGCTGCTAAAATGTTGAGTGGGTTGGAAGTGTTTCTCGAAGCGAGTTGTGTGAAGGTAAACCCGGATTCACCACAAAAACAAGTCAG
ATTTCTCACTCTCTCTGGTGGAAAGAAACTGTTAACTCCTCAACCCCGTTTGAGAACTGGGTTTTTCTCTATACTTGAATCTCACATGTTAAGCCCTAGT
ACCATAAATGAGGCATGCACCTCTGTAGGTGTTGCCAAGAATGGAAGGCCTATTGGATTGGATGAGAAGATCAAGGTTGACCTAATTGTCATTGGTTCTG
TCGCTGTTGACCCAAAAACAGGGGCTCGACTTGGCAAGGGAGAGGGATTTGCTGAACTTGAATATGGGATGCTGCGGTATATGGGAGCTATTGATGACTC
AACACCAGTTGTGACCTCCGTGCATGACTGCCAATTGGTAGAAGATATTCCGGTTGAGAAATTGCTGATCCATGATGTTCCCGTTGACATCATATGCACT
CCCGACCAAGTTATCTTCACCAACACTAATATTCCCAAGCCTCAAGGGATCTATTGGGACAAATTGTCTCCTGAGAAGCTTGCCCAAATTCGGATACTCA
GAGAGCTCAAGAGCAGAATTGAAAGGGAGACCGGGCAGAAACTTCCTTGTGGTCCATCTGAGAAACTACCCCCTACAGCTCAGAGAAGACGAAAATGA
AA sequence
>Potri.005G194800.1 pacid=42804032 polypeptide=Potri.005G194800.1.p locus=Potri.005G194800 ID=Potri.005G194800.1.v4.1 annot-version=v4.1
MDSTLTRIAAPLPLTHTLLFNYPHSSPSLICFFSRRTHSKRLFNSNCKLGSSKRNAHDDNVVLDEKAYEAERLRLDAQARDSMAETSKREMETSSEDDPK
AWKWVIRKRIWDLMEARNIAQNPRPVHHRIPNFVGASAAAKMLSGLEVFLEASCVKVNPDSPQKQVRFLTLSGGKKLLTPQPRLRTGFFSILESHMLSPS
TINEACTSVGVAKNGRPIGLDEKIKVDLIVIGSVAVDPKTGARLGKGEGFAELEYGMLRYMGAIDDSTPVVTSVHDCQLVEDIPVEKLLIHDVPVDIICT
PDQVIFTNTNIPKPQGIYWDKLSPEKLAQIRILRELKSRIERETGQKLPCGPSEKLPPTAQRRRK

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT1G76730 NagB/RpiA/CoA transferase-like... Potri.005G194800
[exp]
0 1
AT2G37920 EMB1513 embryo defective 1513, copper ... Potri.006G092100
[exp]
3.87 0.9702
AT1G02150 Tetratricopeptide repeat (TPR)... Potri.002G139400
[exp]
4.00 0.9704
AT1G23400 CAF2, ATCAF2 ARABIDOPSIS THALIANA HOMOLOG O... Potri.010G042500
[exp]
8.48 0.9700
AT2G47485 unknown protein Potri.002G200000
[exp]
10.19 0.9654
AT4G25650 TIC55-IV, PTC52... TRANSLOCON AT THE INNER ENVELO... Potri.003G219000
[exp]
10.95 0.9458
AT4G01037 AtWTF1 what's this factor?, Ubiquitin... Potri.002G169300
[exp]
11.74 0.9661
AT5G66055 EMB16, EMB2036,... EMBRYO DEFECTIVE 2036, EMBRYO ... Potri.007G060400
[exp]
12.64 0.9677
AT5G66055 EMB16, EMB2036,... EMBRYO DEFECTIVE 2036, EMBRYO ... Potri.005G105800
[exp]
13.41 0.9649
AT1G49975 unknown protein Potri.009G086400
[exp]
13.41 0.9641
AT2G39000 Acyl-CoA N-acyltransferases (N... Potri.008G039300
[exp]
15.42 0.9515

Potri.005G194800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.