Plant FIBer expression Database

Potri.005G194900 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G21790 1421 / 0 ATRNR1, RNR1, CLS8, RIBONUCLEOTIDEREDUCTASE,REDUCTASEPROTEINR1, R1, RIBONUCLEOTIDEREDUCTASE, REDUCT CRINKLY LEAVES 8, RIBONUCLEOTIDE REDUCTASE LARGE SUBUNIT 1, ribonucleotide reductase 1 (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.007G076700
[exp]
1429 / 0 AT2G21790 1448 / 0.0 CRINKLY LEAVES 8, RIBONUCLEOTIDE REDUCTASE LARGE SUBUNIT 1, ribonucleotide reductase 1 (.1)
Potri.005G087300
[exp]
1419 / 0 AT2G21790 1450 / 0.0 CRINKLY LEAVES 8, RIBONUCLEOTIDE REDUCTASE LARGE SUBUNIT 1, ribonucleotide reductase 1 (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10033526
[exp]
1426 / 0 AT2G21790 1514 / 0.0 CRINKLY LEAVES 8, RIBONUCLEOTIDE REDUCTASE LARGE SUBUNIT 1, ribonucleotide reductase 1 (.1)
Lus10020845
[exp]
1422 / 0 AT2G21790 1503 / 0.0 CRINKLY LEAVES 8, RIBONUCLEOTIDE REDUCTASE LARGE SUBUNIT 1, ribonucleotide reductase 1 (.1)
Lus10018867
[exp]
1378 / 0 AT2G21790 1358 / 0.0 CRINKLY LEAVES 8, RIBONUCLEOTIDE REDUCTASE LARGE SUBUNIT 1, ribonucleotide reductase 1 (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF00317 Ribonuc_red_lgN Ribonucleotide reductase, all-alpha domain
CL0339 PFL-like PF02867 Ribonuc_red_lgC Ribonucleotide reductase, barrel domain
Representative CDS sequence
>Potri.005G194900.1 pacid=42804899 polypeptide=Potri.005G194900.1.p locus=Potri.005G194900 ID=Potri.005G194900.1.v4.1 annot-version=v4.1
ATGTACGTGATCAAGCGAGATGGGCGCCAAGAACCGGTACGTTTTGATAAGATAACTGCTCGATTAAAGAAATTGAGTTATGGGTTAAGTAACGATCACT
GTGATCCAGTGCTTGTGGCACAGAAAGTCTGTGCAGGGGTTTATAGAGGTGTCACTACAACCCAGCTTGATGAGTTAGCTGCTGAGACCGCGGCTTCTAT
GACTGCTAATCACCCTGATTATGCTTTGTTGGCTGCAAGAATTTCTGTCTCGAGGCTGCATAAGAATACAAAAAAATCCTTCTCAGAGACGATCGAATTA
ATGTATAACAACTTAAATAAGGGGTCTGGGCAGAAGGCTCCTCTCATTGCAGATGATGTCTACGAAATAATCATGAAGAATGCTGAACGGCTGGACAGTG
AGATCCTCTATGACAGGGATTTTGAATATGATTATTTTGGCTTCAAAACTCTTGAGAGGTCCTACCTTTTGAAGGTTGATGGAAAGATTGTAGAAAGACC
ACAGCACCTACTGATGAGAGTGGCTGTTGGTATCCACAAAGATGACATTGAATCTGCCACCAAAACTTATCACTTAATGTCTCAAAGTTGGTTCACTCAT
GCTACCCCTACCCTTTTCAATGCAGGGACTGCCCAGCCTCAATTGAGCAGTTGCTTTCTCCTGTGCATGAAAGATGACAGCATTGAAGGCATATATGATA
CTCTGAAGGAGTGTGCTGTTATTAGCAAATTAGCTGGAGGAATTGGTATTGCTGTTCATAATATCCACGCCACAGGCAGTTACATTCGGGGGACAAATGG
TACTTCCAATGGTATAGTTCCCATGCTTCGAGTGTTCAACAACACTGCTCGCTATGTTGATCAAGGAGGAGGGAAGAGGAAAGGTGCTTTCGCTATATAT
CTGGAGCCATGGCATGCCGATATCTTTGAGTTTCTAGATCTCAGAAAAAACCATGGAAAGGAAGAACATCGAGCTCGAGACTTATTCCTTGCTCTTTGGA
TTCCTGATCTCTTCATGGAAAGAGTTCGAGGTGATGACAAATGGTCTTTGTTTTGCCCTAGTGAGGCTCCAGGTTTGGCTGATTGTTGGGGACAAGAATT
TGAAAAACTGTATACTCAGTATGAAAGAGAGGATAGGGCAAAGAAAATTATTTCAGCTAGGAAACTCTGGTTTGAGATTTTAAATTCCCAAATTGAAACA
GGAACACCTTACATGCTCTTCAAGGATTCTTGCAACAGGAAAAGCAACCAGCAGAATCTGGGCACTATCAAGTCCTCAAACCTCTGTACTGAAGTTATTG
AGTTCACAAGTCCAACAGAAACAGCAGTTTGCAATCTGGCATCCGTTGCTCTTCCACGATTTGTCATGGAAAGGGGGGTACCTGCGGAATCACAGTCTTC
CAAGATGGTTGGAAGTAGAGAATCAAAGAACAGATACTTTGATTTTGAAAAACTAGCAGAGGTTACAACGACGATCACTGCAAATCTTAATAAAATCATA
GATGTTAATTACTATCCCGTTGAAACTGCAAGGAGGTCAAATTTAAGACACAGACCAATTGGTATTGGTGTTCAAGGTCTTGCTGATACCTTCATTTTGC
TTGGCATGCCATTTGATTCATCAGAGGCAAAAAGGCTAAACAAAGACATATTTGAAACCATATACTACCATGCTCTGAGATCTTCTTCTGAGCTGGCTGC
TAAAGATGGCCCTTATGAAACATATTGTGGAAGCCCTGTGAGCAAGGGGATTTTGCAGATGGACATGTGGGGTGTGACACCATCAGATAGGTGGGATTGG
GATGCTCTTAGGGAAATGATCTCCAAAAGTGGTGTAAGAAATTCCCTTCTCATAGCGCCTATGCCCACTGCTTCAACAAGTCAGATACTTGGCAACAATG
AATGTTTTGAGCCTTATACATCCAATATCTATAGCCGCAGAGTTTTAAGCGGCGAATTTGTTGTGATGAACAAACACCTCCTTAATGATTTAACGGAGAT
GGGTCTCTGGTCACCTGTTCTTAAAAACAAGATAATAAATGAAAGTGGCTCGGTTTCAAAAATCCCTGAGATTCCCGAGCAGCTAAAAGCTATCTATAAG
ACGGTGTGGGAAATCAAGCAAAAGACATTGGTTGACATGGCTGCTGATCGTGGATGCTACATAGACCAAAGTCAGAGTCTGAATATTCACATGGAGCAAC
CTGATCTTGGGAAACTAACTTCCCTGCATTTCCATGCTTGGTCAAAGGGCCTGAAAACAGGTATGTACTACCTGAGAACACGTGCTGCTGCAGATGCTAT
CAAATTCACTGTTGACACAACTGTTCTCAACAATGAAAATGCTAACAAGGCAGAGGATGATGTTAATTCTGATATGGCGCAGGCAGCATGCTCATTGCAG
AACCGGGAAGAGTGCATGGCTTGTGGAAGTTAA
AA sequence
>Potri.005G194900.1 pacid=42804899 polypeptide=Potri.005G194900.1.p locus=Potri.005G194900 ID=Potri.005G194900.1.v4.1 annot-version=v4.1
MYVIKRDGRQEPVRFDKITARLKKLSYGLSNDHCDPVLVAQKVCAGVYRGVTTTQLDELAAETAASMTANHPDYALLAARISVSRLHKNTKKSFSETIEL
MYNNLNKGSGQKAPLIADDVYEIIMKNAERLDSEILYDRDFEYDYFGFKTLERSYLLKVDGKIVERPQHLLMRVAVGIHKDDIESATKTYHLMSQSWFTH
ATPTLFNAGTAQPQLSSCFLLCMKDDSIEGIYDTLKECAVISKLAGGIGIAVHNIHATGSYIRGTNGTSNGIVPMLRVFNNTARYVDQGGGKRKGAFAIY
LEPWHADIFEFLDLRKNHGKEEHRARDLFLALWIPDLFMERVRGDDKWSLFCPSEAPGLADCWGQEFEKLYTQYEREDRAKKIISARKLWFEILNSQIET
GTPYMLFKDSCNRKSNQQNLGTIKSSNLCTEVIEFTSPTETAVCNLASVALPRFVMERGVPAESQSSKMVGSRESKNRYFDFEKLAEVTTTITANLNKII
DVNYYPVETARRSNLRHRPIGIGVQGLADTFILLGMPFDSSEAKRLNKDIFETIYYHALRSSSELAAKDGPYETYCGSPVSKGILQMDMWGVTPSDRWDW
DALREMISKSGVRNSLLIAPMPTASTSQILGNNECFEPYTSNIYSRRVLSGEFVVMNKHLLNDLTEMGLWSPVLKNKIINESGSVSKIPEIPEQLKAIYK
TVWEIKQKTLVDMAADRGCYIDQSQSLNIHMEQPDLGKLTSLHFHAWSKGLKTGMYYLRTRAAADAIKFTVDTTVLNNENANKAEDDVNSDMAQAACSLQ
NREECMACGS

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT2G21790 ATRNR1, RNR1, C... CRINKLY LEAVES 8, RIBONUCLEOTI... Potri.005G194900
[exp]
0 1
AT3G55990 TBL29, ESK1 TRICHOME BIREFRINGENCE-LIKE 29... Potri.008G070200
[exp]
1.41 0.9645
AT2G21540 ATSFH3 SEC14-like 3 (.1.2.3) Potri.004G157600
[exp]
3.46 0.9252 Pt-SEC14.2
AT1G77410 BGAL16 beta-galactosidase 16 (.1) Potri.002G080700
[exp]
4.24 0.9304
Potri.013G151333
[exp]
4.47 0.9033
AT2G22620 Rhamnogalacturonate lyase fami... Potri.014G004500
[exp]
10.00 0.9141
AT5G42690 Protein of unknown function, D... Potri.014G034800
[exp]
10.00 0.8777
AT1G77610 EamA-like transporter family p... Potri.002G084500
[exp]
10.58 0.8903
AT5G65110 ATACX2, ACX2 acyl-CoA oxidase 2 (.1.2) Potri.005G077600
[exp]
11.09 0.7625
AT3G51150 ATP binding microtubule motor ... Potri.005G116900
[exp]
12.24 0.8912
AT5G40470 RNI-like superfamily protein (... Potri.017G069800
[exp]
13.26 0.8797

Potri.005G194900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.