Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G24630 555 / 0 DHHC-type zinc finger family protein (.1) AT5G50020 540 / 0 DHHC-type zinc finger family protein (.1.2) AT3G26935 389 / 7e-133 DHHC-type zinc finger family protein (.1) AT5G41060 356 / 3e-120 DHHC-type zinc finger family protein (.1.2) AT3G48760 336 / 9e-112 DHHC-type zinc finger family protein (.1) AT3G56930 331 / 1e-109 DHHC-type zinc finger family protein (.1.2) AT5G05070 295 / 2e-96 DHHC-type zinc finger family protein (.1) AT3G56920 278 / 7e-91 DHHC-type zinc finger family protein (.1) AT2G40990 276 / 4e-89 DHHC-type zinc finger family protein (.1) AT3G04970 89 / 3e-19 DHHC-type zinc finger family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G065500 [exp] 750 / 0 AT4G24630 543 / 0.0 DHHC-type zinc finger family protein (.1) Potri.007G077000 [exp] 486 / 2e-172 AT4G24630 446 / 6e-157 DHHC-type zinc finger family protein (.1) Potri.017G063800 [exp] 394 / 1e-134 AT3G26935 671 / 0.0 DHHC-type zinc finger family protein (.1) Potri.001G325400 [exp] 393 / 2e-134 AT3G26935 688 / 0.0 DHHC-type zinc finger family protein (.1) Potri.015G101900 [exp] 365 / 3e-123 AT3G26935 466 / 2e-162 DHHC-type zinc finger family protein (.1) Potri.012G103300 [exp] 362 / 4e-122 AT3G26935 507 / 1e-178 DHHC-type zinc finger family protein (.1) Potri.003G160600 [exp] 361 / 5e-122 AT3G26935 435 / 1e-150 DHHC-type zinc finger family protein (.1) Potri.001G070100 [exp] 358 / 7e-121 AT3G26935 435 / 1e-150 DHHC-type zinc finger family protein (.1) Potri.016G025100 [exp] 333 / 8e-110 AT3G56930 497 / 3e-173 DHHC-type zinc finger family protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028737 [exp] 625 / 0 AT4G24630 582 / 0.0 DHHC-type zinc finger family protein (.1) Lus10028687 [exp] 616 / 0 AT4G24630 563 / 0.0 DHHC-type zinc finger family protein (.1) Lus10033527 [exp] 414 / 8e-144 AT4G24630 415 / 1e-144 DHHC-type zinc finger family protein (.1) Lus10020844 [exp] 402 / 7e-139 AT5G50020 405 / 3e-140 DHHC-type zinc finger family protein (.1.2) Lus10032009 [exp] 400 / 3e-137 AT3G26935 694 / 0.0 DHHC-type zinc finger family protein (.1) Lus10035177 [exp] 394 / 6e-135 AT3G26935 694 / 0.0 DHHC-type zinc finger family protein (.1) Lus10016754 [exp] 358 / 5e-120 AT3G26935 473 / 6e-165 DHHC-type zinc finger family protein (.1) Lus10022451 [exp] 352 / 7e-118 AT3G26935 486 / 3e-170 DHHC-type zinc finger family protein (.1) Lus10012096 [exp] 320 / 9e-106 AT3G56930 478 / 7e-167 DHHC-type zinc finger family protein (.1.2) Lus10027274 [exp] 297 / 3e-97 AT5G05070 468 / 2e-164 DHHC-type zinc finger family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01529 [poplar] [flax] DHHC DHHC palmitoyltransferase
Representative CDS sequence Show only first row Show all	>Potri.005G195300.1 pacid=42805415 polypeptide=Potri.005G195300.1.p locus=Potri.005G195300 ID=Potri.005G195300.1.v4.1 annot-version=v4.1 ATGGCAAAGCGCGTGTTCGAAGTATGGAAAGGAAGTAATAAGTTCATCCTTGGTGGGAGATTGATATTTGGACCTGATGCTAGATCACTGATTGTCACTT TATTGCTGATCATTGTTCCTGTAATAATCTTTTGTGTGTTTGTTGTGAGGCATCTTCGCCATGAATTTTCACCGGACAATGCAGGGTATGCGATTCTGGT GGTAGCTATTATCTTTACTATATATGTGTTGGTTCTTCTTTTTCTCACATCAGCCAGGGACCCGGGTATTATTCCACGTAATTCACATCCTCCAGAAGAG GAGTTTCGGTATGATTCTTCAGTGTCAGTTGAGGGAAGACAAACTCCGAGCCTCCAGTTCCCACGGACAAAAGAAGTTATGGTTAATGGCATTCCTGTTC GGGTTAAGTATTGTGATACATGCATGCTTTACCGTCCTCCTCGCTGCTCCCATTGCTCCATTTGTAACAATTGTGTGGAGCGATTTGATCATCATTGCCC CTGGGTGGGCCAGTGCATTGGACTGCGCAACTACCGTTACTTCTTTATGTTCGTTTCTTCATCGACTCTTCTTTGCATCTACGTGTTTTCTATTTCAGCC TTGTACATTAAGGTTTTGATGGATGATTACCATAGCACAGTCTGGAAGGCAATGAAAGAATCTCCTGCGTCTGTCATTCTAATGGCCTATTCTTTTATTT CCCTATGGTTTGTTGGTGGACTTACTGGCTTCCATTTGTACCTCATTGGAACAAACCAGACTACATATGAAAATTTCCGGTACAGAGCTGACAGCAGGAT CAATGTCTACAACCGTGGTTGTTTTGATAATTTTCTTGAAGTCTTTTGCACAAAGGTTAAGCCTTCAAGGAACAACTTCAGGGCTTTTGTTGAAGAGGAA GTACAACAAAGACCCACATTGCCCAGCACTCAGGAAACAGATGTAGAAGATTCTGTTGGAGATCCACGTTCCAAGGTTGAAGATGACCTAGATATTGGTG AAGATATATTGAAGATCTCCCAGCGTCGTAATGTTGAAGAAATTGATGAGGACATATGCAGCAGAGGGAGCAACGCACCTCCTCATAATACATTAGAGGT GGATTTAGCATTGAGTTCAGATCATCGAGCCCCCACGATTCGATCGGATACTAGACATTCAAGCTGGGGAAGGAGAAGTGGTAGCTGGGAAATTGCACCC GAGATCCTTGCCAACTCTACAGTCACTGAAAGCAGAGCCTTTACCACTCCTAAGGAACCATACCAATGA
AA sequence Show only first row Show all	>Potri.005G195300.1 pacid=42805415 polypeptide=Potri.005G195300.1.p locus=Potri.005G195300 ID=Potri.005G195300.1.v4.1 annot-version=v4.1 MAKRVFEVWKGSNKFILGGRLIFGPDARSLIVTLLLIIVPVIIFCVFVVRHLRHEFSPDNAGYAILVVAIIFTIYVLVLLFLTSARDPGIIPRNSHPPEE EFRYDSSVSVEGRQTPSLQFPRTKEVMVNGIPVRVKYCDTCMLYRPPRCSHCSICNNCVERFDHHCPWVGQCIGLRNYRYFFMFVSSSTLLCIYVFSISA LYIKVLMDDYHSTVWKAMKESPASVILMAYSFISLWFVGGLTGFHLYLIGTNQTTYENFRYRADSRINVYNRGCFDNFLEVFCTKVKPSRNNFRAFVEEE VQQRPTLPSTQETDVEDSVGDPRSKVEDDLDIGEDILKISQRRNVEEIDEDICSRGSNAPPHNTLEVDLALSSDHRAPTIRSDTRHSSWGRRSGSWEIAP EILANSTVTESRAFTTPKEPYQ

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G24630			DHHC-type zinc finger family p...		Potri.005G195300 [exp]	0	1
AT4G35410			Clathrin adaptor complex small...		Potri.014G079000 [exp]	12.00	0.8881	AP19.1
AT1G78870		UBC35 ,UBC13A	UBIQUITIN CONJUGATING ENZYME 1...		Potri.011G111400 [exp]	23.74	0.8647
AT2G42570		TBL39	TRICHOME BIREFRINGENCE-LIKE 39...		Potri.019G090200 [exp]	25.69	0.8309
AT1G80370		CYCA2;4	Cyclin A2;4 (.1)		Potri.003G058200 [exp]	32.58	0.8573
AT1G13580		LOH3, LAG13	LAG One Homologue 3, LAG1 long...		Potri.010G134700 [exp]	35.59	0.8617
AT1G10430		PP2A-2	protein phosphatase 2A-2 (.1)		Potri.012G073300 [exp]	38.10	0.8618	Pt-VFPP2.1
AT1G24764		ATMAP70-2	microtubule-associated protein...		Potri.008G135100 [exp]	46.04	0.8496
AT3G14290		PAE2	20S proteasome alpha subunit E...		Potri.003G072500 [exp]	50.86	0.8522	PAE1.2
AT5G53150			DNAJ heat shock N-terminal dom...		Potri.015G097500 [exp]	54.67	0.8306
AT4G17486			PPPDE putative thiol peptidase...		Potri.006G154400 [exp]	55.85	0.8545

Compare expression of checked genes

Potri.005G195300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.