Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G42440 388 / 1e-134 Protein kinase superfamily protein (.1) AT4G01330 239 / 8e-75 Protein kinase superfamily protein (.1.2) AT3G59110 236 / 3e-73 Protein kinase superfamily protein (.1) AT1G01540 235 / 3e-73 Protein kinase superfamily protein (.1.2) AT5G18500 232 / 6e-72 Protein kinase superfamily protein (.1.2) AT3G17420 228 / 2e-70 GPK1 glyoxysomal protein kinase 1 (.1) AT2G42960 227 / 7e-70 Protein kinase superfamily protein (.1) AT5G07280 236 / 2e-69 EXS, EMS1 EXTRA SPOROGENOUS CELLS, EXCESS MICROSPOROCYTES1, Leucine-rich repeat transmembrane protein kinase (.1) AT5G53890 235 / 2e-69 AtPSKR2 phytosylfokine-alpha receptor 2 (.1) AT1G09440 225 / 2e-69 Protein kinase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G065400 [exp] 543 / 0 AT5G42440 387 / 4e-134 Protein kinase superfamily protein (.1) Potri.014G088800 [exp] 235 / 6e-73 AT1G01540 687 / 0.0 Protein kinase superfamily protein (.1.2) Potri.003G074000 [exp] 243 / 6e-72 AT1G72300 1215 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Potri.011G049600 [exp] 228 / 1e-71 AT3G09010 427 / 2e-149 Protein kinase superfamily protein (.1) Potri.008G214200 [exp] 231 / 2e-71 AT5G18500 659 / 0.0 Protein kinase superfamily protein (.1.2) Potri.010G001600 [exp] 229 / 3e-71 AT5G18500 635 / 0.0 Protein kinase superfamily protein (.1.2) Potri.005G003300 [exp] 230 / 6e-71 AT1G56720 712 / 0.0 Protein kinase superfamily protein (.1.2.3) Potri.005G203300 [exp] 229 / 9e-71 AT3G59110 686 / 0.0 Protein kinase superfamily protein (.1) Potri.001G161000 [exp] 239 / 1e-70 AT1G72300 1199 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015344 [exp] 471 / 6e-167 AT5G42440 400 / 6e-139 Protein kinase superfamily protein (.1) Lus10014996 [exp] 243 / 8e-72 AT5G07280 1264 / 0.0 EXTRA SPOROGENOUS CELLS, EXCESS MICROSPOROCYTES1, Leucine-rich repeat transmembrane protein kinase (.1) Lus10006215 [exp] 230 / 1e-71 AT1G56720 599 / 0.0 Protein kinase superfamily protein (.1.2.3) Lus10038875 [exp] 241 / 5e-71 AT5G07280 1248 / 0.0 EXTRA SPOROGENOUS CELLS, EXCESS MICROSPOROCYTES1, Leucine-rich repeat transmembrane protein kinase (.1) Lus10001423 [exp] 230 / 8e-71 AT3G59110 763 / 0.0 Protein kinase superfamily protein (.1) Lus10001055 [exp] 231 / 2e-70 AT3G59110 766 / 0.0 Protein kinase superfamily protein (.1) Lus10036386 [exp] 228 / 2e-70 AT1G01540 748 / 0.0 Protein kinase superfamily protein (.1.2) Lus10007919 [exp] 227 / 4e-70 AT1G01540 751 / 0.0 Protein kinase superfamily protein (.1.2) Lus10019722 [exp] 235 / 4e-69 AT1G72300 1189 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Lus10016395 [exp] 234 / 5e-69 AT1G72300 1170 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF07714 [poplar] [flax] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase
Representative CDS sequence Show only first row Show all	>Potri.005G195500.1 pacid=42804129 polypeptide=Potri.005G195500.1.p locus=Potri.005G195500 ID=Potri.005G195500.1.v4.1 annot-version=v4.1 ATGGACCCCGCTCTCATAGCCGCAGCCGCATCCGCCGCTGGCAGCGTCCTCTTCCTAATAATTATCTTGGCTTTCATAGTCTTCGTCTGCAAGTCAACCA AAGACTACGACTATGGACGCCGCCTCCGCCACCATCAGACCAGAACCGTAACAAACCCGGAGCTCTCCCCCGTAACAATGGACGAAACCGCCTCTTATGA CCCGACTATAAACCACATCTCCATGGAAGAGCTAAAAGTCTCCACCAAGAACTTCTCCACCGATTTAATCATCGGCGATGGCAGTTTCGGCTTGGTTTAT AAAGCTGCACTCTACAACGGCTCCACGGTTGCTATTAAAAAGCTTGACCCGGACGCTTTTCAAGGTTTTCGTGAGTTTCGCGCCGAGATGGAGACTCTAG GTCAGTTACGCCATGGAAATATTGTCAAGATTCTCGGGTATTGTGTTTCGGGCCGGGACCGGGTTTTAATTCTGGAGTTCGTTGAAAGAGGGAGTCTTGA CCAGTGGATTCACGACACATCATCAACGGATAACGATCACTTTGATAAGTTCCCATTACCCTGGGAGACGAGGATCAAGATAGTTATGGGCGTGGCCAAT GGGCTTGCTTATTTGCATGGGCTTGATACTCCCATTATTCATAGGGATATTAAGGCTAGTAACGTTTTGTTGGACGCGAGCTTTCAGGCCCATATCTCTG ATTTTGGGCTTGCCCGTAGAATCGAGGCGTTGCGCTCGCATGTGTCCACGCAGGTTGCGGGGACTTTTGGGTACATGCCACCGGAGTATAAAGACGGTTT CATCGGAGCGACGGTGCAGGCAGACGTTTACAGTTTTGGGATTTTGATGTTTGAGATTGCGACCGCAGAGAGGCCGGATTTGCCTAAGGTGGTGGAGAAG AAAGAGGTGGGGTTTATTGAATGGGTTAAGAAGATGTTGGGGCAAGATCGTCATATGGAGATGTTGGATTGTAATATGCCGAAGGAGGGTTTGAGTGGAG ATGATCAAGTTAAGGAATATTTTAGGATTGCTTCTTTGTGCACAGAGGAGTTTATGGGAGATAGGCCCGCCATGAGTGAAGTTGTGGATTTGTTGAAAAA ACTTTCATAG
AA sequence Show only first row Show all	>Potri.005G195500.1 pacid=42804129 polypeptide=Potri.005G195500.1.p locus=Potri.005G195500 ID=Potri.005G195500.1.v4.1 annot-version=v4.1 MDPALIAAAASAAGSVLFLIIILAFIVFVCKSTKDYDYGRRLRHHQTRTVTNPELSPVTMDETASYDPTINHISMEELKVSTKNFSTDLIIGDGSFGLVY KAALYNGSTVAIKKLDPDAFQGFREFRAEMETLGQLRHGNIVKILGYCVSGRDRVLILEFVERGSLDQWIHDTSSTDNDHFDKFPLPWETRIKIVMGVAN GLAYLHGLDTPIIHRDIKASNVLLDASFQAHISDFGLARRIEALRSHVSTQVAGTFGYMPPEYKDGFIGATVQADVYSFGILMFEIATAERPDLPKVVEK KEVGFIEWVKKMLGQDRHMEMLDCNMPKEGLSGDDQVKEYFRIASLCTEEFMGDRPAMSEVVDLLKKLS

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G42440			Protein kinase superfamily pro...		Potri.005G195500 [exp]	0	1
AT4G31270	Trihelix		sequence-specific DNA binding ...		Potri.006G279100 [exp]	2.82	0.7234
AT1G70740			Protein kinase superfamily pro...		Potri.010G109700 [exp]	17.54	0.6260
AT4G24220		5[beta]-StR, 5[...	VEIN PATTERNING 1, Δ4,5-s...		Potri.017G030700 [exp]	18.02	0.6639
AT3G19860	bHLH	bHLH121	basic Helix-Loop-Helix 121, ba...		Potri.004G168100 [exp]	20.12	0.6685
AT5G65720		ATNIFS1, NIFS1 ...	NITROGEN FIXATION S HOMOLOG 1,...		Potri.008G005101 [exp]	22.44	0.6235
AT5G66550			Maf-like protein (.1)		Potri.007G025000 [exp]	24.81	0.5953
AT3G19950			RING/U-box superfamily protein...		Potri.007G074014 [exp]	41.98	0.5871
AT1G51730			Ubiquitin-conjugating enzyme f...		Potri.001G193700 [exp]	44.27	0.6360
AT3G47850			unknown protein		Potri.012G072600 [exp]	48.06	0.6175
AT1G01730			unknown protein		Potri.014G082600 [exp]	76.91	0.5784

Compare expression of checked genes

Potri.005G195500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.