Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G71695 460 / 3e-163 Peroxidase superfamily protein (.1) AT4G36430 266 / 3e-87 Peroxidase superfamily protein (.1) AT2G18150 264 / 3e-86 Peroxidase superfamily protein (.1) AT5G06730 263 / 1e-85 Peroxidase superfamily protein (.1) AT2G18140 262 / 1e-85 Peroxidase superfamily protein (.1) AT4G33420 261 / 2e-85 Peroxidase superfamily protein (.1) AT4G08770 254 / 2e-82 Prx37 peroxidase 37, Peroxidase superfamily protein (.1) AT5G66390 254 / 2e-82 Peroxidase superfamily protein (.1) AT1G49570 254 / 4e-82 Peroxidase superfamily protein (.1) AT5G06720 251 / 2e-81 ATPA2 peroxidase 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G065300 [exp] 597 / 0 AT1G71695 468 / 2e-166 Peroxidase superfamily protein (.1) Potri.005G195700 [exp] 524 / 0 AT1G71695 453 / 2e-160 Peroxidase superfamily protein (.1) Potri.015G003600 [exp] 277 / 2e-91 AT1G05260 285 / 6e-95 RARE COLD INDUCIBLE GENE 3, Peroxidase superfamily protein (.1) Potri.015G003500 [exp] 269 / 2e-88 AT1G05260 291 / 1e-97 RARE COLD INDUCIBLE GENE 3, Peroxidase superfamily protein (.1) Potri.012G006800 [exp] 269 / 2e-88 AT1G05260 291 / 2e-97 RARE COLD INDUCIBLE GENE 3, Peroxidase superfamily protein (.1) Potri.003G214500 [exp] 267 / 1e-87 AT5G19890 422 / 4e-149 Peroxidase superfamily protein (.1) Potri.T045500 [exp] 266 / 1e-87 AT4G33420 441 / 9e-157 Peroxidase superfamily protein (.1) Potri.018G136900 [exp] 266 / 2e-87 AT4G33420 451 / 1e-160 Peroxidase superfamily protein (.1) Potri.004G134800 [exp] 262 / 9e-86 AT4G33420 457 / 3e-163 Peroxidase superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028735 [exp] 468 / 3e-166 AT1G71695 457 / 1e-161 Peroxidase superfamily protein (.1) Lus10032926 [exp] 271 / 4e-89 AT1G05260 292 / 5e-98 RARE COLD INDUCIBLE GENE 3, Peroxidase superfamily protein (.1) Lus10010634 [exp] 266 / 5e-87 AT1G44970 449 / 5e-159 Peroxidase superfamily protein (.1) Lus10026748 [exp] 265 / 9e-87 AT5G19890 402 / 6e-141 Peroxidase superfamily protein (.1) Lus10029543 [exp] 265 / 1e-86 AT4G33420 479 / 1e-171 Peroxidase superfamily protein (.1) Lus10025535 [exp] 267 / 6e-86 AT5G19890 406 / 9e-141 Peroxidase superfamily protein (.1) Lus10028736 [exp] 257 / 7e-84 AT1G05260 266 / 4e-88 RARE COLD INDUCIBLE GENE 3, Peroxidase superfamily protein (.1) Lus10041784 [exp] 251 / 2e-81 AT5G66390 519 / 0.0 Peroxidase superfamily protein (.1) Lus10034547 [exp] 250 / 3e-81 AT5G42180 471 / 7e-169 peroxidase 64, Peroxidase superfamily protein (.1) Lus10034207 [exp] 249 / 1e-80 AT5G05340 454 / 8e-162 Peroxidase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0617 [poplar] [flax] Peroxidase PF00141 [poplar] [flax] peroxidase Peroxidase
Representative CDS sequence Show only first row Show all	>Potri.005G195600.1 pacid=42803531 polypeptide=Potri.005G195600.1.p locus=Potri.005G195600 ID=Potri.005G195600.1.v4.1 annot-version=v4.1 ATGGCCAGAGCTGCTATGTCCTTTACCTCTCTTCTTCTGATTTCTTCTCTCTTTCTAGCTTCTTGGTTTTGTGCCACTGAAGCACAAGGCACCATCCCTA TAGAGAATGGCCTGTCATGGACATTCTACAAGTCTAAATGCCCTAAAGTTGAATCCATTATAAGGAAACAGCTGGGAAAGGTGTTCAAGAAGGATATCGA ACAAGCTGCTGGCTTGCTTCGTCTCCACTTCCATGATTGCTTTGTTCAGGGATGTGATGGTTCGGTATTGCTTGATGGATCGGCGAGTGGTCCAAGCGAG CAGGACGCCCCTCCCAACCTGACCTTGAGAGCAAAGGCGTTTGAGATCATCGAAGACCTACGCCGGCGCGTGGAAAAGGCTTGCGGCCTTGTCGTCTCCT GTTCTGATATTCTTGCGCTTGCAGCCCGTGACTCTGTTTACCTGTCTGGTGGCCCAGATTATAATGTTCCCTTGGGAAGGCGAGACGGTCTAAAATTTGC AACTCAAAATGAAACCTTAGACAACCTCCCGCCACCCTTTGCTAACGCCGACACAATTCTCTCATCTCTCGCCACCAAGGGCTTCGATGCCACCGACGTG GTAGCCCTGTCCGGTGGCCACACCATCGGTATAAGTCACTGCAGCTCTTTCACTGACCGCCTCTATCCAACCCAAGATCCTACAATGGACAAAACCTTTG CCAACAATCTCAAGGAAGTTTGCCCCACAAGAGACTTCAATAACACAACCGTGTTGGATATTCGATCTCCTAATAAATTTGACAACAAGTACTATGTTGA TCTCATGAATCGCCAAGGCCTGTTTACTTCAGACCAGGACTTGTACACGAACAAGAAGACAAGGGGCATTGTCACTAGCTTTGCTGTTAATCAAAGTTTG TTCTTTGATAAGTTTGTGGTTGCAATGATCAAAATGTCACAGCTCAAGGTCTTGACAGGAAATCAAGGTGAAATCCGCGCCAGTTGCGAGGAGAGAAATT CAGGCTACAGTTACTTGGAGTCTGTGGTGGAAGAGGGTCTCGACGCACTGTCCGGATTAATATGA
AA sequence Show only first row Show all	>Potri.005G195600.1 pacid=42803531 polypeptide=Potri.005G195600.1.p locus=Potri.005G195600 ID=Potri.005G195600.1.v4.1 annot-version=v4.1 MARAAMSFTSLLLISSLFLASWFCATEAQGTIPIENGLSWTFYKSKCPKVESIIRKQLGKVFKKDIEQAAGLLRLHFHDCFVQGCDGSVLLDGSASGPSE QDAPPNLTLRAKAFEIIEDLRRRVEKACGLVVSCSDILALAARDSVYLSGGPDYNVPLGRRDGLKFATQNETLDNLPPPFANADTILSSLATKGFDATDV VALSGGHTIGISHCSSFTDRLYPTQDPTMDKTFANNLKEVCPTRDFNNTTVLDIRSPNKFDNKYYVDLMNRQGLFTSDQDLYTNKKTRGIVTSFAVNQSL FFDKFVVAMIKMSQLKVLTGNQGEIRASCEERNSGYSYLESVVEEGLDALSGLI

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G71695			Peroxidase superfamily protein...		Potri.005G195600 [exp]	0	1
AT4G27950	AP2_ERF	CRF4	cytokinin response factor 4 (....		Potri.015G023200 [exp]	8.12	0.6358
AT2G30130	AS2	PCK1, LBD12, AS...	PEACOCK 1, Lateral organ bound...		Potri.010G184400 [exp]	9.05	0.6502
AT3G19184	B3		AP2/B3-like transcriptional fa...		Potri.004G141900 [exp]	9.27	0.6535
AT4G27950	AP2_ERF	CRF4	cytokinin response factor 4 (....		Potri.012G032900 [exp]	14.69	0.6266
AT1G16040			unknown protein		Potri.003G184701 [exp]	15.49	0.6423
AT3G12830			SAUR-like auxin-responsive pro...		Potri.007G067800 [exp]	17.14	0.5876
AT5G42180		PER64	peroxidase 64, Peroxidase supe...		Potri.002G018000 [exp]	18.33	0.6286
AT1G13950		EIF5A, ATELF5A-...	eukaryotic elongation factor 5...		Potri.008G092000 [exp]	20.39	0.6044	Pt-EIF.3
AT3G42640		AHA8	H\(+\)-ATPase 8, H\(+\)-ATPase...		Potri.006G005900 [exp]	21.00	0.6304	Pt-AHA6.2
AT1G03940			HXXXD-type acyl-transferase fa...		Potri.019G118000 [exp]	21.09	0.6369

Compare expression of checked genes

Potri.005G195600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.