Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G22790 184 / 1e-58 unknown protein AT1G34010 115 / 2e-32 unknown protein AT1G55475 53 / 3e-09 unknown protein AT3G13480 50 / 7e-08 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G064900 [exp] 319 / 2e-112 AT1G22790 188 / 2e-60 unknown protein Potri.008G170700 [exp] 50 / 4e-08 AT2G33390 77 / 8e-20 unknown protein Potri.001G003300 [exp] 49 / 3e-07 AT3G13480 85 / 4e-21 unknown protein Potri.010G067200 [exp] 47 / 5e-07 AT2G33390 76 / 3e-19 unknown protein Potri.003G221800 [exp] 43 / 3e-05 AT3G13480 99 / 6e-27 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028691 [exp] 185 / 5e-59 AT1G22790 189 / 1e-60 unknown protein Lus10028733 [exp] 181 / 1e-57 AT1G22790 192 / 6e-62 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.005G196300.6 pacid=42803365 polypeptide=Potri.005G196300.6.p locus=Potri.005G196300 ID=Potri.005G196300.6.v4.1 annot-version=v4.1 ATGTTATTGGCAGTGGAAGGAGGAGGGTTCTTCTCTTCTTCGGCTTCTGGGTATAGCAAGGGCTTGACCCTTCTTCTCTTGGGTCAGAAGCACGAAGACA AACCCATGAGAGTTACGCCGTGGAATCAGTACCAGTTGGTGGACCAAGAACCTGACTTTGACCTCCAGCTGGCTTCCTTGAAGAACCGGCTTTCCCGCGG CTGCGCTTCTTTTGTCTGCTTTGGTCGCGCTTCCGCAGGACTTGAATCCCCATCACCTCTCAAAGTAGGCCCTGCCCAACAGAAGGATGTCTTGCCAGAT CCTCTTGTTGCTGACAAGGGAAAAGATCTTACAACTGAACTCGAAGGTGATAATAATGCAATAAAAGTTACTCTTAGGAGTAGTTTGAAGAAGACATCAA AAAGTATTCCAGTCCCTGTTGAGGATGCTAATCAGAGCGAGCCATTGAATGACAAAGGTAGTGATATCCCTGGTCATACAGAAAGGAGAAAAGTGCAGTG GACCGATGTTTGTGGGAGTGAGCTTGCTGAAATTAGGGAATTTGAACCAAGTGAAACAGGTGGATCAGATGATGAATTTGAGAATGGAAATGAAAGAAGT TGTTCATGTGTGATTATGTGA
AA sequence Show only first row Show all	>Potri.005G196300.6 pacid=42803365 polypeptide=Potri.005G196300.6.p locus=Potri.005G196300 ID=Potri.005G196300.6.v4.1 annot-version=v4.1 MLLAVEGGGFFSSSASGYSKGLTLLLLGQKHEDKPMRVTPWNQYQLVDQEPDFDLQLASLKNRLSRGCASFVCFGRASAGLESPSPLKVGPAQQKDVLPD PLVADKGKDLTTELEGDNNAIKVTLRSSLKKTSKSIPVPVEDANQSEPLNDKGSDIPGHTERRKVQWTDVCGSELAEIREFEPSETGGSDDEFENGNERS CSCVIM

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G22790			unknown protein		Potri.005G196300 [exp]	0	1
AT4G31130			Protein of unknown function (D...		Potri.006G280900 [exp]	2.23	0.6981
AT1G03250			unknown protein		Potri.019G046400 [exp]	5.74	0.6865
AT4G32390			Nucleotide-sugar transporter f...		Potri.006G252500 [exp]	15.23	0.6888
AT1G51200			A20/AN1-like zinc finger famil...		Potri.016G051700 [exp]	18.86	0.6742
AT1G02130		ARA5, AtRABD2a,...	ARABIDOPSIS THALIANA RAB D2A, ...		Potri.002G138400 [exp]	23.04	0.6553	RAB1.3
AT2G24420			DNA repair ATPase-related (.1....		Potri.018G003700 [exp]	26.11	0.6226
AT4G01370		ATMPK4	MAP kinase 4 (.1)		Potri.003G131800 [exp]	26.15	0.6053	MMK3.1
AT2G46800		ATMTP1, ZAT1, Z...	ZINC TRANSPORTER OF ARABIDOPSI...		Potri.001G450900 [exp]	28.56	0.6328
AT5G03290		IDH-V	isocitrate dehydrogenase V (.1...		Potri.006G126700 [exp]	29.51	0.6383
AT2G02390		GST18, ATGSTZ1	GLUTATHIONE S-TRANSFERASE 18, ...		Potri.014G069600 [exp]	31.00	0.6130

Compare expression of checked genes

Potri.005G196300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.