Plant FIBer expression Database

Pt-RPS18.2 (Potri.005G196600) [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol Pt-RPS18.2
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT4G09800 278 / 1e-96 RPS18C S18 ribosomal protein (.1)
AT1G34030 278 / 1e-96 Ribosomal protein S13/S18 family (.1)
AT1G22780 278 / 1e-96 RPS18A, PFL1, PFL 40S RIBOSOMAL PROTEIN S18, POINTED FIRST LEAVES 1, POINTED FIRST LEAVES, Ribosomal protein S13/S18 family (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.005G211200
[exp]
277 / 5e-96 AT4G09800 276 / 7e-97 S18 ribosomal protein (.1)
Potri.002G051300
[exp]
276 / 1e-95 AT4G09800 275 / 2e-96 S18 ribosomal protein (.1)
Potri.002G064632
[exp]
134 / 7e-41 AT4G09800 151 / 7e-49 S18 ribosomal protein (.1)
Potri.002G088400
[exp]
49 / 6e-07 AT1G77750 175 / 4e-56 Ribosomal protein S13/S18 family (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10042603
[exp]
275 / 3e-95 AT1G22780 304 / 5e-108 40S RIBOSOMAL PROTEIN S18, POINTED FIRST LEAVES 1, POINTED FIRST LEAVES, Ribosomal protein S13/S18 family (.1)
Lus10006914
[exp]
275 / 3e-95 AT4G09800 304 / 5e-108 S18 ribosomal protein (.1)
Lus10014676
[exp]
274 / 7e-95 AT1G34030 303 / 1e-107 Ribosomal protein S13/S18 family (.1)
Lus10022057
[exp]
274 / 7e-95 AT4G09800 303 / 1e-107 S18 ribosomal protein (.1)
Lus10034179
[exp]
273 / 2e-94 AT1G34030 302 / 3e-107 Ribosomal protein S13/S18 family (.1)
Lus10043405
[exp]
218 / 5e-73 AT1G34030 245 / 3e-85 Ribosomal protein S13/S18 family (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0303 H2TH PF00416 Ribosomal_S13 Ribosomal protein S13/S18
Representative CDS sequence
>Potri.005G196600.2 pacid=42803049 polypeptide=Potri.005G196600.2.p locus=Potri.005G196600 ID=Potri.005G196600.2.v4.1 annot-version=v4.1
ATGAAAAGCTGGCATAATATCCTTAAACCCAGGGAAAAAAAGAATTGGGTCATCTACCACATAGAAAAGTTTTGGTGGGTAAAATCGTCTTTTGAAAAAA
CAAAACCCAAACACTTTTTAATAAAAACCCTCGTTCGCTATCTTGACTCTTCCTCTGCTACAACCCGCCCGTTCCCGCCCCGCCCCGCCCCAGAGCCCCG
CTCCTCTCGAAAACACAAAATGTCTTTGGTGGCTAACGAGGATTTTCAGCACATTCTACGTGTGCTGAACACGAATGTAGATGGTAAACAAAAGATAATG
TTTGCTTTGACATCAATCAAAGGTATTGGCAGGCGTTTCTCTAACATTGTCTGCAAGAAGGCCGATGTTGATATGAACAAGAGGGCTGGTGAACTATCTG
CAGCCGAGTTGGATAACCTCATGACTATTGTTGCAAATCCTCGCCAGTTCAAAATCCCAGACTGGTTTTTGAATAGGCAGAAGGATTACAAAGACGGGAA
GTATTCTCAGGTCGTGTCAAATGCATTGGACATGAAGTTGAGAGATGATTTGGAGCGTTTGAAGAAGATCAGGAACCACCGTGGTCTGAGGCACTACTGG
GGTCTTCGTGTCAGGGGGCAGCACACAAAGACTACTGGCCGTCGTGGAAAGACTGTTGGTGTCTCTAAGAAGCGTTGA
AA sequence
>Potri.005G196600.2 pacid=42803049 polypeptide=Potri.005G196600.2.p locus=Potri.005G196600 ID=Potri.005G196600.2.v4.1 annot-version=v4.1
MKSWHNILKPREKKNWVIYHIEKFWWVKSSFEKTKPKHFLIKTLVRYLDSSSATTRPFPPRPAPEPRSSRKHKMSLVANEDFQHILRVLNTNVDGKQKIM
FALTSIKGIGRRFSNIVCKKADVDMNKRAGELSAAELDNLMTIVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNHRGLRHYW
GLRVRGQHTKTTGRRGKTVGVSKKR

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT4G09800 RPS18C S18 ribosomal protein (.1) Potri.005G196600
[exp]
0 1 Pt-RPS18.2
AT2G34520 RPS14 mitochondrial ribosomal protei... Potri.001G424950
[exp]
1.00 0.8254
AT1G02870 unknown protein Potri.014G130400
[exp]
7.61 0.7858
AT2G20490 NOP10, EDA27 EMBRYO SAC DEVELOPMENT ARREST ... Potri.005G226300
[exp]
7.74 0.7753
AT5G28640 ATGIF1, GIF1, A... ARABIDOPSIS GRF1-INTERACTING F... Potri.019G013100
[exp]
8.48 0.7135 Pt-GIF1.1
AT3G61110 ARS27A ribosomal protein S27 (.1) Potri.001G069100
[exp]
9.59 0.7616 Pt-ARS27.2
AT5G02960 Ribosomal protein S12/S23 fami... Potri.010G217100
[exp]
10.00 0.7603 RPS23.2
AT5G60390 GTP binding Elongation factor ... Potri.006G130900
[exp]
10.48 0.7273
AT2G20060 Ribosomal protein L4/L1 family... Potri.004G004800
[exp]
16.00 0.7338
AT2G18400 ribosomal protein L6 family pr... Potri.007G024900
[exp]
16.30 0.7470
AT2G03780 Translin family protein (.1) Potri.010G138300
[exp]
17.29 0.6951

Potri.005G196600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.