Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	GI.1
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G22770 1609 / 0 FB, GI gigantea protein (GI) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G064400 [exp] 1956 / 0 AT1G22770 1626 / 0.0 gigantea protein (GI) (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028693 [exp] 1552 / 0 AT1G22770 1562 / 0.0 gigantea protein (GI) (.1) Lus10028731 [exp] 1544 / 0 AT1G22770 1446 / 0.0 gigantea protein (GI) (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.005G196700.6 pacid=42804759 polypeptide=Potri.005G196700.6.p locus=Potri.005G196700 ID=Potri.005G196700.6.v4.1 annot-version=v4.1 ATGGCTAGTTCTTCTTCTGAGAGATGGATTGATGGTCTTCAATTCTCTTCATTGTTCTGGCCTCCACCTCAAGATGCCCAACAAAGAAAGGCACAAATTA CTGCCTATGTCGACTACTTTGGGCAGTGCACATCGGAACACTTTCCAGATGATATTTCTGAGTTGATTCGCAATCGTTATCCATCAAAGGACAAACGCCT TTTTGATGATGTTTTGGCTACGTTTGTCCTTCATCATCCAGAGCATGGACATGCTGTTGTTCTTCCAATTATTTCATGTATTATAGACGGTACACTAGTT TATGATAGGAGTAGCCCTCCATTTGCCTCTTTCATTTCCTTAGTCTGCCCTGGTAGTGAGAATGAATATTCTGAACAATGGGCTCTGGCGTGCGGAGAGA TTTTGCGGATTTTAACTCATTACAATCGCCCAATATACAAGAGAGAACAACAGAATAATGAAACAGACAGAAGCAGTAGTGACAGCCACGCTACAAGTAG TGAATCAGCAGAAGGGAAATCCACCAGCATGCCTTTGGTACAACAAGAGAGGAAACCTTTCAGGCCTCTGTCTCCCTGGATCACCGATATATTGCTTGCT GCACCTCTGGGTATTAGAAGTGACTACTTTCGTTGCATCCCATGTAGGAAGTGTACTCGAATGATCTTGGACTTGTACGGATGGCTGAAGTTTCAAACGT GCGAGGCACCTTTTGTGGGACAAAATTGTGAGGCCACATGGCAAAAGCGGACAATACCATCGGTACCAAAGCTAATATGGAGGTGCAGTGGTGTTATGGG TAAATATGCTGCGGGAGAGCTCAAACCACCAACAACCACTTCTTCACGTGGGTCTGGAAAACATCCTCAGCTCATCCCATCAACTCCAAGGTGGGCTGTA GCAAATGGTGCTGGGGTTATTTTAAGTGTGTGTGATGAGGAAGTTGCTCGTTATGAGACTGCTACATTAACTGCAGCTGCTGTTCCTGCACTTTTACTCC CTCCTCCAACAACAGCTTTGGATGAGCATCTAGTTGCTGGCCTACCTGCTCTTGAGCCATATGCACGTTTATTTCACCGGTATTACGCCATTGCAACTCC GAGTGCCACTCAACGACTTCTTCTTGGACTTCTTGAAGCACCACCATCATGGGCTCCAGATGCACTTGATGCTGCTGTACAACTTGTGGAACTTCTTCGA GCTGCTGAAGATTATGCATCTGGAATAAGGCTTCCCAGGAACTGGATGCATCTGCATTTCTTGCGTGCAATAGGGACTGCAATGTCCATGAGAGCAGGTA TAGCAGCTGACGCAGCTGCAGCTTTACTTTTCCGCATTCTCTCACAGCCTGCATTGCTTTTTCCTCCACTAAGGCAAGTTGAAGGGGTGGAAGTTCAACA TGAACCTTTGGGTGGTTACATTTCATGCTACAGGAAGCAGATAGAAGTGCCTGCAGCTGAAGCGACTATTGAAGCAACTGCCCAGGGAATTGCATCCATG CTTTGTGCCCATGGACCTGAGGTTGAATGGAGAATTTGTACCATTTGGGAAGCTGCTTATGGTCTGATTCCTTTAAGTTCCTCAGCAGTTGATCTTCCTG AAATCATAGTTGCAACACCATTGCAACCTCCATTATTGTCATGGAATCTGTATATACCTCTCCTTAAGGTCCTGGAATATCTTCCACGTGGAAGTCCATC CGAAGCATGCCTCATGAAGATATTTGTTGCCACTGTGGAAGCAATTCTTCAGAGAACATTTCCGCCGGAGGCTTCTAGAGAACAGACCAGAAGAACAAGA TATTTTTCTAGCTTAGGGCCTGCCTCCAAAAACCTTGCTGTGGCAGAGCTTCGTACTATGGTCCACTCACTCTTTCTAGAATCATGTGCCTCAGTAGAGC TTGCATCGCGACTACTATTTGTTGTGTTAACTGTGTGTGTCAGTCACGAAGCTCATTCCCGTGGGAGCAAGAGACCAAGAGGAGAAGAAAACGATCTGCC TGAGGATGGCACAGAGGACTCACAATCAACATCCGAAATGCGAAGAAACATGAAATCTAGAAGGATGAAGAAACAAGGTCCAGTTGCAGCATTTGATTCT TATGTTCTGGCTGCTGTATGTGCTCTGGCTTGTGAGCTTCAAATATTCCCCTTTGTTTCCAGGGGGAGTAACCATTCAACTTCTAAACATTCAGAGACTG TAGCCAAGCCTGCAAAACTGAATGGAGCTGTTAGTGAGTTCCAAACTAGTCTCAACTCTGCAATCCATCATACTCACAGAATTTTATCTATTTTGGAGGC ACTTTTTTCTCTAAAACCATCTACTATTGGCACATCTTGGAGTTATAGTTCAAATGAGATAGTAGCTGCAGCTATGGTTGCCGCTCATGTTTCTGAACTA TTTAGACGTTCTAAGGCTTGCATGCACGCGCTCTCTGTTTTGATGCGATGCAAGTGGGATAATGAAATTTACACCAGGGCATCCTCACTATATAACCTCA TTGATGTTCACAGTAAGGCTGTTGCGTCCATAGTTAACAAAGCTGAGCCATTAGGAGCACATTTGCACGCACCAGTGTGGAAAGATTCTCTTGTGTGTTC TGATGGTAACAAGCAAAATAGAAGTGCAAGCACTGGCTGCTTTAATTCAGGGCAATCATCTGCCCTGCAGTCCACAGAATTAGTTCATTCAGAAACTAAA CTTAAATGTGGGAGAGCATCACATTCAGAAGAAGGCTCTGGAAGCACTTCGGGAAAAGGTATTGCTGGACTCCCATTGGATGCTTCAGATTTGGCCAATT TCTTAACAATGCACAGGCATATTGGATTCAATTGCAGTGCACAAGTTCTATTGAGATCAGTGCTTCCAGAGAAGCAAGAGTTATGTTTCTCTGTTGTTTC TCTATTGTGGCAAAAGTTAATAGCATCACCCGAAACTCAACCTAGTGCAGAAAGCACTTCTGCTCAACAAGGATGGAGACAGGTTGTTGACGCACTATGC AATGTTGTATCAGCATCGCCAACAATAGCAGCCACAGCAGTTGTTCTTCAGGCGGAGAGGGAATTGCAGCCTTGGATCGCGAAAGATGATGATTCAGGTC AGATAATGTGGAGAATCAACCAGCGGATTGTCAAGTTGATTGTTGAGCTGATGAGAAATCATGATACCCCAGAATCGTTGGTAATTTTGGCTAGTGCATC AGATCTACTTCTCCGCGCCACAGATGGGATGCTTGTTGATGGAGAAGCTTGCACTTTACCACAGCTTGAGCTACTAGAAGCAACAGCCAGAGCAGTTCAG CCAGTGCTGCAGTGGGGAGAGTCTGGATTTGCAGTTGCAGATGGCCTTTCAAACCTCTTAAAGTGTCGTCTGCCAGCGACTATACGATGCCTTTCTCATC CAAGTGCTCATGTCCGTGCTCTGAGCACATCTGTTCTTCGTGATATTCAGCATACTGGTTCCATAAAACCCGCTTCTAAACTCACACACAGGAATGGAAT CCATGGACCCTCTTATCAATATCTCAGATCAGATGTCATCAACTGGCAAGCTGATATAGAAAAGTGCCTAACATGGGAAGCCCATAGCCGACTCGCGACA GGAATGCCTGTTCATCATCTTGATACTGCCGCCAAGGAGTTAGGCTGTACTATTTCCATTTAA
AA sequence Show only first row Show all	>Potri.005G196700.6 pacid=42804759 polypeptide=Potri.005G196700.6.p locus=Potri.005G196700 ID=Potri.005G196700.6.v4.1 annot-version=v4.1 MASSSSERWIDGLQFSSLFWPPPQDAQQRKAQITAYVDYFGQCTSEHFPDDISELIRNRYPSKDKRLFDDVLATFVLHHPEHGHAVVLPIISCIIDGTLV YDRSSPPFASFISLVCPGSENEYSEQWALACGEILRILTHYNRPIYKREQQNNETDRSSSDSHATSSESAEGKSTSMPLVQQERKPFRPLSPWITDILLA APLGIRSDYFRCIPCRKCTRMILDLYGWLKFQTCEAPFVGQNCEATWQKRTIPSVPKLIWRCSGVMGKYAAGELKPPTTTSSRGSGKHPQLIPSTPRWAV ANGAGVILSVCDEEVARYETATLTAAAVPALLLPPPTTALDEHLVAGLPALEPYARLFHRYYAIATPSATQRLLLGLLEAPPSWAPDALDAAVQLVELLR AAEDYASGIRLPRNWMHLHFLRAIGTAMSMRAGIAADAAAALLFRILSQPALLFPPLRQVEGVEVQHEPLGGYISCYRKQIEVPAAEATIEATAQGIASM LCAHGPEVEWRICTIWEAAYGLIPLSSSAVDLPEIIVATPLQPPLLSWNLYIPLLKVLEYLPRGSPSEACLMKIFVATVEAILQRTFPPEASREQTRRTR YFSSLGPASKNLAVAELRTMVHSLFLESCASVELASRLLFVVLTVCVSHEAHSRGSKRPRGEENDLPEDGTEDSQSTSEMRRNMKSRRMKKQGPVAAFDS YVLAAVCALACELQIFPFVSRGSNHSTSKHSETVAKPAKLNGAVSEFQTSLNSAIHHTHRILSILEALFSLKPSTIGTSWSYSSNEIVAAAMVAAHVSEL FRRSKACMHALSVLMRCKWDNEIYTRASSLYNLIDVHSKAVASIVNKAEPLGAHLHAPVWKDSLVCSDGNKQNRSASTGCFNSGQSSALQSTELVHSETK LKCGRASHSEEGSGSTSGKGIAGLPLDASDLANFLTMHRHIGFNCSAQVLLRSVLPEKQELCFSVVSLLWQKLIASPETQPSAESTSAQQGWRQVVDALC NVVSASPTIAATAVVLQAERELQPWIAKDDDSGQIMWRINQRIVKLIVELMRNHDTPESLVILASASDLLLRATDGMLVDGEACTLPQLELLEATARAVQ PVLQWGESGFAVADGLSNLLKCRLPATIRCLSHPSAHVRALSTSVLRDIQHTGSIKPASKLTHRNGIHGPSYQYLRSDVINWQADIEKCLTWEAHSRLAT GMPVHHLDTAAKELGCTISI

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G22770		FB, GI	gigantea protein (GI) (.1)		Potri.005G196700 [exp]	0	1	GI.1
AT3G32940			RNA-binding KH domain-containi...		Potri.001G008700 [exp]	1.73	0.8927
AT1G68050		ADO3, FKF1	"flavin-binding, kelch repeat,...		Potri.010G105700 [exp]	1.73	0.8614	FKF1.1
AT1G22770		FB, GI	gigantea protein (GI) (.1)		Potri.002G064400 [exp]	3.00	0.8371	Pt-GI.2
AT2G35940	HD	BLH1, EDA29	embryo sac development arrest ...		Potri.006G203000 [exp]	6.16	0.8619
AT5G35460			unknown protein		Potri.006G145600 [exp]	9.16	0.8392
AT1G78600	CO	BBX22, DBB3, ST...	SALT TOLERANCE HOMOLOG 3, DOUB...		Potri.011G105400 [exp]	9.38	0.8386
AT2G01440			DEAD/DEAH box RNA helicase fam...		Potri.010G112500 [exp]	9.74	0.8451
AT2G17410	ARID		ARID/BRIGHT DNA-binding domain...		Potri.011G145450 [exp]	10.95	0.8586
AT1G29400		AML5	MEI2-like protein 5 (.1.2)		Potri.005G202000 [exp]	12.48	0.8257
AT4G14200			Pentatricopeptide repeat (PPR)...		Potri.002G235900 [exp]	19.79	0.8251

Compare expression of checked genes

Potri.005G196700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.