Plant FIBer expression Database

SOL1.1 (Potri.005G197000) [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol SOL1.1
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G71696 636 / 0 SOL1.4, SOL1.3, SOL1.2, S SUPPRESSOR OF LLP1 1, carboxypeptidase D, putative (.1.2)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10028730
[exp]
673 / 0 AT1G71696 605 / 0.0 SUPPRESSOR OF LLP1 1, carboxypeptidase D, putative (.1.2)
Lus10028694
[exp]
607 / 0 AT1G71696 554 / 0.0 SUPPRESSOR OF LLP1 1, carboxypeptidase D, putative (.1.2)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0035 Peptidase_MH PF00246 Peptidase_M14 Zinc carboxypeptidase
Representative CDS sequence
>Potri.005G197000.1 pacid=42803511 polypeptide=Potri.005G197000.1.p locus=Potri.005G197000 ID=Potri.005G197000.1.v4.1 annot-version=v4.1
ATGAAAATCTTCTTCTTCTTCTCTCTCCTCGTTTTCTCTCTCTCTTTCTCCTCTTCCATCGCTCGCGGCCCTCTCCATTCTTCTCTTCCTTCAGGTATTA
GAAATGGTAGTAGAATTAGTTATTCGGATTCTGTAAGGAGGCAGTTATTCCAGGATAAACCGTCTAAGTTAAGTGATGATAGAGCTAAAGGATACATGAC
TAACTCTGATCTTGAAAAGGCTGTCAAAGAATTCGGTCGAAGATGCAGTAATATTTCTAGGATTTACAGTATTGGAAAGAGTGTCCATGGAGTTCCGCTG
TGGGTTATTGAGATTTCTGACAAGCCTGGGGAGGAAGAGCCTGAACCTGCATTCAAGTTCATTGGAAATGTCCATGGGGATGAACCTGTAGGTCGTGAGC
TTCTGTTACGTCTTGCTAATTGGATATGCGATAACTATATGAAGGATTCCTTGGCCAGATTGATTGTAGAAAATATTCACCTTCATATTCTTCCATCCAT
GAATCCTGATGGTTATTTTTTGAGGAGCCGTGGTAATGCTAACAATATTGATCTAAATCGAGATTTTCCAGACCAGTTCTTTCCACTCAATAATGACATA
AATGCACGCCAACCAGAAACAAGAGCAGTTATGAATTGGCTGAGAGAGATACAATTTGCAGCGTCTGCTAGTTTGCACGGGGGTGCCCTAGTTGCAAATT
ACCCATGGGATGGTACTGAGGATAAAAGGAGAAATTACTATGCATGCCCTGATGATGACACATTCCGGTTCATGGCGAGTATATATAGTCGTTCTCATCA
TAACATGTCTCTGAGCAAGGAATTCCCTGGAGGAATCACAAATGGAGCGTTTTGGTACCCAATATATGGTGGAATGCAAGATTGGAATTATATACATGCT
GGATGTTTTGAATTGACCTTGGAGATTAGTGAAAACAAATGGCCTAATGCCAATGAGCTTCCTACTCTTTGGGAGTACAACAAAATGAGTTTACTGAACC
TTGCAGCCAGCCTTGTGAAGACAGGAATACATGGAAGGATCTTTTCGTCAGATAGTGGAATGCCACTCCCTGGCTCTGTTTCGATCAAGGGAATAAATTA
CACAGTTAAAGCTGGCAGAGGTTTTGCTGATTACCATCGGCTACTTGCTCCAGGGGAGAGATATGAAGTTATGGCCACTATGCCTGGGTACAAACCAAAA
ACCACACGTATCTCACTGGAAGAAGCAGCCATGACTCTGGACTTTATTCTTGATCCAGAGGTCACAACGAAGGGGAGCCTACGAAGTATTAATGATTGTA
GGTGTGAAAGCAAGTGCGGGCTTGAAGTTTTCTGGAGGATGCACTCAGAGGTTTATTTTATCTTGATTGTTGTCTCTGTATTCCTTTGCTTTTTATTGAA
GAGGAAGCTGAAAGTCAACATTTTAAACCATAGACAGTTGCCTAGAAGGTCAGTTCAGGTATGA
AA sequence
>Potri.005G197000.1 pacid=42803511 polypeptide=Potri.005G197000.1.p locus=Potri.005G197000 ID=Potri.005G197000.1.v4.1 annot-version=v4.1
MKIFFFFSLLVFSLSFSSSIARGPLHSSLPSGIRNGSRISYSDSVRRQLFQDKPSKLSDDRAKGYMTNSDLEKAVKEFGRRCSNISRIYSIGKSVHGVPL
WVIEISDKPGEEEPEPAFKFIGNVHGDEPVGRELLLRLANWICDNYMKDSLARLIVENIHLHILPSMNPDGYFLRSRGNANNIDLNRDFPDQFFPLNNDI
NARQPETRAVMNWLREIQFAASASLHGGALVANYPWDGTEDKRRNYYACPDDDTFRFMASIYSRSHHNMSLSKEFPGGITNGAFWYPIYGGMQDWNYIHA
GCFELTLEISENKWPNANELPTLWEYNKMSLLNLAASLVKTGIHGRIFSSDSGMPLPGSVSIKGINYTVKAGRGFADYHRLLAPGERYEVMATMPGYKPK
TTRISLEEAAMTLDFILDPEVTTKGSLRSINDCRCESKCGLEVFWRMHSEVYFILIVVSVFLCFLLKRKLKVNILNHRQLPRRSVQV

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT1G71696 SOL1.4, SOL1.3,... SUPPRESSOR OF LLP1 1, carboxyp... Potri.005G197000
[exp]
0 1 SOL1.1
AT4G24740 AME1, AFC2 FUS3-complementing gene 2 (.1.... Potri.015G085700
[exp]
3.74 0.7247
AT5G03730 AtCTR1, SIS1, C... SUGAR-INSENSITIVE 1, CONSTITUT... Potri.016G095750
[exp]
6.32 0.7158
AT1G73350 unknown protein Potri.004G066700
[exp]
10.95 0.7115
AT5G52200 AtI-2 inhibitor-2, phosphoprotein ph... Potri.015G140500
[exp]
13.56 0.6446
AT5G27860 unknown protein Potri.005G023000
[exp]
17.17 0.6621
AT2G43490 Ypt/Rab-GAP domain of gyp1p su... Potri.007G132900
[exp]
22.44 0.6501
AT1G15780 unknown protein Potri.003G013300
[exp]
26.66 0.6340
AT3G55020 Ypt/Rab-GAP domain of gyp1p su... Potri.010G215000
[exp]
44.82 0.6478
AT5G43130 TAF4, TAF4B TBP-associated factor 4B, TBP-... Potri.014G018000
[exp]
58.26 0.5864
AT1G73150 GTE3 global transcription factor gr... Potri.001G285700
[exp]
58.34 0.5441 GTE906

Potri.005G197000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.