Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G39460 416 / 5e-147 SAMC1, SAMT1 SAM TRANSPORTER1, S-adenosylmethionine carrier 1 (.1.2) AT1G34065 404 / 1e-141 SAMC2 S-adenosylmethionine carrier 2 (.1) AT4G11440 144 / 1e-38 Mitochondrial substrate carrier family protein (.1) AT1G74240 127 / 1e-33 Mitochondrial substrate carrier family protein (.1) AT5G42130 124 / 2e-32 AtMfl1 MitoFerrinLike1, Mitochondrial substrate carrier family protein (.1) AT2G26360 115 / 2e-29 Mitochondrial substrate carrier family protein (.1) AT2G30160 112 / 1e-28 Mitochondrial substrate carrier family protein (.1) AT2G35800 110 / 1e-26 SAMTL S-adenosyl methionine transporter-like, mitochondrial substrate carrier family protein (.1) AT1G07030 106 / 2e-26 Mitochondrial substrate carrier family protein (.1) AT1G79900 100 / 2e-24 ATMBAC2, BAC2 RABIDOPSIS MITOCHONDRIAL BASIC AMINO ACID CARRIER 2, Mitochondrial substrate carrier family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G085900 [exp] 427 / 1e-151 AT4G39460 487 / 9e-175 SAM TRANSPORTER1, S-adenosylmethionine carrier 1 (.1.2) Potri.003G127600 [exp] 150 / 5e-41 AT4G11440 437 / 3e-146 Mitochondrial substrate carrier family protein (.1) Potri.005G189600 [exp] 130 / 7e-35 AT5G42130 542 / 0.0 MitoFerrinLike1, Mitochondrial substrate carrier family protein (.1) Potri.010G217900 [exp] 123 / 3e-31 AT2G35800 1040 / 0.0 S-adenosyl methionine transporter-like, mitochondrial substrate carrier family protein (.1) Potri.008G043700 [exp] 122 / 8e-31 AT2G35800 1044 / 0.0 S-adenosyl methionine transporter-like, mitochondrial substrate carrier family protein (.1) Potri.009G077600 [exp] 118 / 1e-30 AT1G07030 425 / 4e-150 Mitochondrial substrate carrier family protein (.1) Potri.012G066000 [exp] 116 / 4e-30 AT1G74240 446 / 6e-158 Mitochondrial substrate carrier family protein (.1) Potri.016G125200 [exp] 115 / 1e-29 AT1G07030 436 / 1e-154 Mitochondrial substrate carrier family protein (.1) Potri.001G282400 [exp] 115 / 2e-29 AT1G07030 426 / 1e-150 Mitochondrial substrate carrier family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005787 [exp] 410 / 2e-144 AT4G39460 494 / 2e-177 SAM TRANSPORTER1, S-adenosylmethionine carrier 1 (.1.2) Lus10006812 [exp] 399 / 1e-139 AT4G39460 478 / 6e-171 SAM TRANSPORTER1, S-adenosylmethionine carrier 1 (.1.2) Lus10029770 [exp] 128 / 6e-34 AT5G42130 478 / 5e-169 MitoFerrinLike1, Mitochondrial substrate carrier family protein (.1) Lus10023493 [exp] 123 / 5e-31 AT2G35800 1056 / 0.0 S-adenosyl methionine transporter-like, mitochondrial substrate carrier family protein (.1) Lus10040375 [exp] 121 / 2e-30 AT2G35800 1066 / 0.0 S-adenosyl methionine transporter-like, mitochondrial substrate carrier family protein (.1) Lus10026395 [exp] 118 / 2e-30 AT2G30160 483 / 5e-173 Mitochondrial substrate carrier family protein (.1) Lus10042258 [exp] 117 / 2e-30 AT2G30160 484 / 2e-173 Mitochondrial substrate carrier family protein (.1) Lus10017849 [exp] 117 / 3e-30 AT1G74240 430 / 6e-151 Mitochondrial substrate carrier family protein (.1) Lus10035134 [exp] 96 / 2e-22 AT5G15640 477 / 2e-170 Mitochondrial substrate carrier family protein (.1) Lus10001463 [exp] 96 / 2e-22 AT2G47490 415 / 1e-146 NAD+ transporter 1, ARABIDOPSIS THALIANA NAD+ TRANSPORTER 1, NAD+ transporter 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00153 [poplar] [flax] Mito_carr Mitochondrial carrier protein
Representative CDS sequence Show only first row Show all	>Potri.005G197200.1 pacid=42804553 polypeptide=Potri.005G197200.1.p locus=Potri.005G197200 ID=Potri.005G197200.1.v4.1 annot-version=v4.1 ATGGATGTACCAGCTTTTCAAAATATCTCTCTTGGTGCATTGGAGTATAAGAGGTGTAATTCTCTAATGGAGCCTCCGTGTAGATTTTTCGCATCAGTCA GTGCAGCTGAGAACAAACCATTTTATTTCTTACATGCGGTGTATGAGGGCATCATAGCTGGAGGTGCTGCAGGTGTTATTGCAGAAGCAGTTTTATACCC TATTGATACAATTAAAACTCGATTGCAGGCTGTTCGTGGTGGAGGGAAAATCAATTTGAAGGGTCTTTATTCTGGATTGGCTGGAAATCTTGCTGGTGTC TTACCGGCTTCTGCTATATTTGTTGGCATATATGAACCCACAAAGCAGAAATTGCTAAAATCTTTGCCCGAAAACCTCAGCGCCTTAGCCCAGCTGACTG CAGGTGCTATTGGAGGTGCTGCTTCTTCTCTTGTTCGTGTGCCAACAGAGGTTGTTAAGCAAAGGATGCAAACTGGGCAATTTGCTTCAGCCCCTGATGC CATCCGTCTTATTGTCTCTAAGGAGGGTTTTAAAGGTCTCTATGTGGGGTATGGATCCTTTTTATTGAGAGACTTGCCATTTGATGCAATTCAGTTTTGC ATCTATGAGCAAATGCTAATGGGATATAAGTTAGCGGCAAAGAGAGATCCAAAGGATGCGGAGATCGCTATAGTTGGTGCTTTTGCTGGTGCAATAACTG GAGCCATGACTACTCCACTCGATGTAGTGAAAACCAGATTAATGGTCCAGGGATCTGCTAACCAGTACAAAGGGATTTTTGATTGTGCCAGGACCATAGC AAAAGAAGAAGGAACCCGTGCTCTTTTGAAGGGTATTGGACCAAGAGTATTGTGGATCGGTGTTGGAGGTGCAATCTTCTTTGGTGTCCTTGAAAAGACA AAACAAATACTCGCTCAAAGGTGCCCAGAGCCTAAGGTGTGA
AA sequence Show only first row Show all	>Potri.005G197200.1 pacid=42804553 polypeptide=Potri.005G197200.1.p locus=Potri.005G197200 ID=Potri.005G197200.1.v4.1 annot-version=v4.1 MDVPAFQNISLGALEYKRCNSLMEPPCRFFASVSAAENKPFYFLHAVYEGIIAGGAAGVIAEAVLYPIDTIKTRLQAVRGGGKINLKGLYSGLAGNLAGV LPASAIFVGIYEPTKQKLLKSLPENLSALAQLTAGAIGGAASSLVRVPTEVVKQRMQTGQFASAPDAIRLIVSKEGFKGLYVGYGSFLLRDLPFDAIQFC IYEQMLMGYKLAAKRDPKDAEIAIVGAFAGAITGAMTTPLDVVKTRLMVQGSANQYKGIFDCARTIAKEEGTRALLKGIGPRVLWIGVGGAIFFGVLEKT KQILAQRCPEPKV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G39460		SAMC1, SAMT1	SAM TRANSPORTER1, S-adenosylme...		Potri.005G197200 [exp]	0	1
AT4G26550			Got1/Sft2-like vescicle transp...		Potri.014G170700 [exp]	1.00	0.9137
AT1G45207			Remorin family protein (.2)		Potri.002G125200 [exp]	3.16	0.9025
AT5G19160		TBL11	TRICHOME BIREFRINGENCE-LIKE 11...		Potri.008G203900 [exp]	3.46	0.9018
AT1G10417			unknown protein		Potri.008G190600 [exp]	4.58	0.9024
AT4G00710		BSK3	BR-signaling kinase 3 (.1)		Potri.002G158400 [exp]	5.00	0.9007
AT2G35060		KUP11	K+ uptake permease 11, K+ upta...		Potri.001G123700 [exp]	5.47	0.9005	Pt-KUP10.1
AT1G10180			unknown protein		Potri.015G119300 [exp]	7.07	0.8944
AT1G06290		ATACX3, ACX3	acyl-CoA oxidase 3 (.1)		Potri.019G092600 [exp]	8.54	0.8459
AT1G35510			O-fucosyltransferase family pr...		Potri.019G080900 [exp]	9.16	0.8721
AT4G35300		TMT2	tonoplast monosaccharide trans...		Potri.009G168500 [exp]	10.00	0.8741

Compare expression of checked genes

Potri.005G197200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.