Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G50920 582 / 0 CLPC1, CLPC, ATHSP93-V, HSP93-V, DCA1 HEAT SHOCK PROTEIN 93-V, DE-REGULATED CAO ACCUMULATION 1, CLPC homologue 1 (.1) AT3G48870 421 / 4e-138 ClpC2, ATCLPC, ATHSP93-III, HSP93-III ClpC2, Clp ATPase (.1.2) AT5G51070 356 / 9e-113 SAG15, CLPD, ERD1 SENESCENCE ASSOCIATED GENE 15, EARLY RESPONSIVE TO DEHYDRATION 1, Clp ATPase (.1) AT5G15450 340 / 1e-106 AtCLPB3, APG6, CLPB3, CLPB-P CASEIN LYTIC PROTEINASE B-P, ALBINO AND PALE GREEN 6, casein lytic proteinase B3 (.1) AT2G25140 324 / 9e-101 HSP98.7, CLPB-M, CLPB4 HEAT SHOCK PROTEIN 98.7, CASEIN LYTIC PROTEINASE B-M, casein lytic proteinase B4 (.1) AT1G74310 300 / 4e-92 HOT1, ATHSP101 heat shock protein 101 (.1) AT4G14670 171 / 4e-46 CLPB2 casein lytic proteinase B2 (.1) AT3G45450 88 / 9e-19 Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein (.1) AT1G07200 51 / 1e-06 Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein (.1.2) AT2G40130 47 / 3e-05 Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G112000 [exp] 454 / 3e-150 AT5G51070 1328 / 0.0 SENESCENCE ASSOCIATED GENE 15, EARLY RESPONSIVE TO DEHYDRATION 1, Clp ATPase (.1) Potri.015G110000 [exp] 449 / 2e-148 AT5G51070 1282 / 0.0 SENESCENCE ASSOCIATED GENE 15, EARLY RESPONSIVE TO DEHYDRATION 1, Clp ATPase (.1) Potri.012G105900 [exp] 434 / 7e-143 AT5G50920 1505 / 0.0 HEAT SHOCK PROTEIN 93-V, DE-REGULATED CAO ACCUMULATION 1, CLPC homologue 1 (.1) Potri.015G105100 [exp] 433 / 1e-142 AT5G50920 1508 / 0.0 HEAT SHOCK PROTEIN 93-V, DE-REGULATED CAO ACCUMULATION 1, CLPC homologue 1 (.1) Potri.004G124800 [exp] 341 / 4e-107 AT5G15450 1567 / 0.0 CASEIN LYTIC PROTEINASE B-P, ALBINO AND PALE GREEN 6, casein lytic proteinase B3 (.1) Potri.017G090600 [exp] 324 / 2e-100 AT5G15450 1598 / 0.0 CASEIN LYTIC PROTEINASE B-P, ALBINO AND PALE GREEN 6, casein lytic proteinase B3 (.1) Potri.006G262700 [exp] 323 / 2e-100 AT2G25140 1361 / 0.0 HEAT SHOCK PROTEIN 98.7, CASEIN LYTIC PROTEINASE B-M, casein lytic proteinase B4 (.1) Potri.015G057000 [exp] 304 / 2e-93 AT1G74310 1567 / 0.0 heat shock protein 101 (.1) Potri.015G056900 [exp] 303 / 4e-93 AT1G74310 1566 / 0.0 heat shock protein 101 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032544 [exp] 546 / 0 AT5G50920 1271 / 0.0 HEAT SHOCK PROTEIN 93-V, DE-REGULATED CAO ACCUMULATION 1, CLPC homologue 1 (.1) Lus10016723 [exp] 434 / 7e-143 AT5G50920 1526 / 0.0 HEAT SHOCK PROTEIN 93-V, DE-REGULATED CAO ACCUMULATION 1, CLPC homologue 1 (.1) Lus10036017 [exp] 434 / 7e-143 AT5G50920 1542 / 0.0 HEAT SHOCK PROTEIN 93-V, DE-REGULATED CAO ACCUMULATION 1, CLPC homologue 1 (.1) Lus10043197 [exp] 336 / 9e-111 AT5G50920 802 / 0.0 HEAT SHOCK PROTEIN 93-V, DE-REGULATED CAO ACCUMULATION 1, CLPC homologue 1 (.1) Lus10043013 [exp] 344 / 2e-108 AT5G51070 1288 / 0.0 SENESCENCE ASSOCIATED GENE 15, EARLY RESPONSIVE TO DEHYDRATION 1, Clp ATPase (.1) Lus10032514 [exp] 348 / 2e-106 AT5G51070 1280 / 0.0 SENESCENCE ASSOCIATED GENE 15, EARLY RESPONSIVE TO DEHYDRATION 1, Clp ATPase (.1) Lus10041018 [exp] 328 / 7e-102 AT2G25140 1511 / 0.0 HEAT SHOCK PROTEIN 98.7, CASEIN LYTIC PROTEINASE B-M, casein lytic proteinase B4 (.1) Lus10030705 [exp] 320 / 9e-99 AT5G15450 1619 / 0.0 CASEIN LYTIC PROTEINASE B-P, ALBINO AND PALE GREEN 6, casein lytic proteinase B3 (.1) Lus10013191 [exp] 319 / 3e-98 AT5G15450 1605 / 0.0 CASEIN LYTIC PROTEINASE B-P, ALBINO AND PALE GREEN 6, casein lytic proteinase B3 (.1) Lus10040527 [exp] 298 / 1e-94 AT1G74310 906 / 0.0 heat shock protein 101 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF07728 [poplar] [flax] AAA_5 AAA domain (dynein-related subfamily) CL0671 [poplar] [flax] AAA_lid PF10431 [poplar] [flax] ClpB_D2-small C-terminal, D2-small domain, of ClpB protein
Representative CDS sequence Show only first row Show all	>Potri.005G197400.1 pacid=42804371 polypeptide=Potri.005G197400.1.p locus=Potri.005G197400 ID=Potri.005G197400.1.v4.1 annot-version=v4.1 ATGGCGCGTCTAGTTGCTGGCACCAAATTTCACGGAGATTTTGAAGAAAGATTAACAGGGATTGTTGATGAAGTTAAACAAAGTGATGGAAATATAGTTC TTTTCATTGATGAATTGCATACCCTTGTTGGCAATGGCCAGACACTAGATGCTACTAATATACTAAAGCCAGCTCTTGCAAGAGGCGAGCTAAAGTGTAT TGGAGCCACAACAATTGATGAATATCGAAGGTACATTGAAAAAGATGGAGCACTCAAAAGGCGTTTTCTGCATGTGGATGTGCCAGAGCCATCTGTTGAT GAGGCGGTAGAGATACTGAAAGGAATACAACGAAAATACGAAGCTCATCATGATGTCAAATACGCAGATGAGGCTTTGGTTGCAGCAGTTCGTTTATCAA ACCAATACATAAGCGGTCTATTTCTACCGGATAAGGCCATAGACTTGATCGATGAAGCTGGTGCCAGAGTTCAGCTGCGTCAAGCGCGATCAGCTTCAGA GAAACTTCTTGTGACTGAAGAGGATATACAAGCTGTTGTCTCGATGGTGACGGGAATTCCTCTTGATAAAGTCACCGATAAAGAATCTCGTCGACTCTTA AACATGGAGGCAGAACTGCACAAGTACATTGTAGGCCAGGAAGAAGCTGTGAAGGCAGTTAGTCATGCTATTCGCCGAGCACGAGTCGGCACAAAAGACC CCAACAAACCAATTGCGAGCTTTTTATTCACCGGTCCGACTGGCGTAGGGAAAACAGAACTTGCCAAGGCATTGGCTGTTGAGTATTTTGGCTCCAAAGA AGCCGTCGTCAGGATTGATATGTCTGAATACATGGAAAAACATACTGTATCAAAGCTTTTTGGATCACCTCCTGGCTATATAGGGTATGATGACGGTGGT CAGTTTACTGAAGCTGTTCGTTGCAGAGCCCATACCGTGGTTCTCTTTGATGAGATTGAGAAGGCTCACCAAGATGTTAACAGGGTGTTTCTTCAGATTT TAGATGATGGTACGTTGACTGATGGTAAAGGACGAAAGGTGGACTTTAAAAACACAATCATTATAATGACTTCAAATATTGGTAATAGCTTGATTGCCCA GGAAGACGAGGAAGATGAGATACGATTCAACACCGTCAAGCTTATAGTAGCTGAGGAACTGAAGAAAGAATTCAGCCCAGAGTTCTTGAATCGAATAGAT GAAGTGATCGTGTTCAGAAAATTGAACAATGCACAGCTAAACGAGATTGCAGACTTGATGCTTGCGGAAGTTTACGGAAGGCTAAAGGCAAAGAACATCA TTATACGAGTAACAGATGGATTAAAAAGGAAGATAATTGAAGAAGGGAACAACCTTAGCTACGGAGCAAGGCCATTGAAGAGGGCCATTGTGAGGCTTTT GGAGGATAACATTGCTAAAGGGATCTTGAATGGATTTGTAGAGGAGGGACGTTCTGTCATTGTAGACGTTAATTCAAACGGAAACGTTATCATGCTACAT AGTGATGTAGCCGTAGAAACCGAAGATTACGAGCATTCTATGATTTAG
AA sequence Show only first row Show all	>Potri.005G197400.1 pacid=42804371 polypeptide=Potri.005G197400.1.p locus=Potri.005G197400 ID=Potri.005G197400.1.v4.1 annot-version=v4.1 MARLVAGTKFHGDFEERLTGIVDEVKQSDGNIVLFIDELHTLVGNGQTLDATNILKPALARGELKCIGATTIDEYRRYIEKDGALKRRFLHVDVPEPSVD EAVEILKGIQRKYEAHHDVKYADEALVAAVRLSNQYISGLFLPDKAIDLIDEAGARVQLRQARSASEKLLVTEEDIQAVVSMVTGIPLDKVTDKESRRLL NMEAELHKYIVGQEEAVKAVSHAIRRARVGTKDPNKPIASFLFTGPTGVGKTELAKALAVEYFGSKEAVVRIDMSEYMEKHTVSKLFGSPPGYIGYDDGG QFTEAVRCRAHTVVLFDEIEKAHQDVNRVFLQILDDGTLTDGKGRKVDFKNTIIIMTSNIGNSLIAQEDEEDEIRFNTVKLIVAEELKKEFSPEFLNRID EVIVFRKLNNAQLNEIADLMLAEVYGRLKAKNIIIRVTDGLKRKIIEEGNNLSYGARPLKRAIVRLLEDNIAKGILNGFVEEGRSVIVDVNSNGNVIMLH SDVAVETEDYEHSMI

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G50920		CLPC1, CLPC, AT...	HEAT SHOCK PROTEIN 93-V, DE-RE...		Potri.005G197400 [exp]	0	1
AT1G54570			Esterase/lipase/thioesterase f...		Potri.013G033101 [exp]	3.74	0.8190
AT4G24430			Rhamnogalacturonate lyase fami...		Potri.002G110300 [exp]	7.74	0.8014
					Potri.013G099450 [exp]	8.00	0.8016
AT5G53592			FBD-like domain family protein...		Potri.001G401850 [exp]	9.79	0.7771
AT1G26660			Prefoldin chaperone subunit fa...		Potri.010G163600 [exp]	13.22	0.7957
					Potri.003G098301 [exp]	13.41	0.7974
AT2G37710		RLK	receptor lectin kinase (.1)		Potri.009G036450 [exp]	22.58	0.7695
					Potri.002G200150 [exp]	26.73	0.7537
					Potri.013G098066 [exp]	32.98	0.7009
AT1G55180		PLDALPHA4, PLDE...	phospholipase D alpha 4 (.1)		Potri.003G037700 [exp]	33.04	0.6522	PLDEPSILON.1

Compare expression of checked genes

Potri.005G197400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.