Plant FIBer expression Database

Potri.005G197500 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT4G09760 486 / 1e-172 Protein kinase superfamily protein (.1.2.3)
AT1G71697 480 / 3e-170 ATCK1 choline kinase 1 (.1)
AT1G74320 470 / 3e-166 Protein kinase superfamily protein (.1)
AT2G26830 174 / 2e-50 EMB1187 embryo defective 1187, Protein kinase superfamily protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.002G063700
[exp]
649 / 0 AT4G09760 481 / 2e-171 Protein kinase superfamily protein (.1.2.3)
Potri.001G032000
[exp]
502 / 9e-179 AT1G74320 531 / 0.0 Protein kinase superfamily protein (.1)
Potri.003G193000
[exp]
496 / 3e-176 AT1G74320 523 / 0.0 Protein kinase superfamily protein (.1)
Potri.006G120700
[exp]
174 / 2e-50 AT2G26830 524 / 0.0 embryo defective 1187, Protein kinase superfamily protein (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10028728
[exp]
529 / 0 AT4G09760 469 / 1e-166 Protein kinase superfamily protein (.1.2.3)
Lus10028696
[exp]
525 / 0 AT4G09760 464 / 8e-165 Protein kinase superfamily protein (.1.2.3)
Lus10024127
[exp]
467 / 2e-163 AT1G74320 484 / 4e-171 Protein kinase superfamily protein (.1)
Lus10026145
[exp]
458 / 7e-159 AT1G74320 499 / 6e-176 Protein kinase superfamily protein (.1)
Lus10005386
[exp]
420 / 2e-145 AT1G74320 426 / 1e-148 Protein kinase superfamily protein (.1)
Lus10019424
[exp]
156 / 2e-41 AT2G26830 471 / 1e-161 embryo defective 1187, Protein kinase superfamily protein (.1)
Lus10008675
[exp]
0 / 1 AT1G74320 91 / 2e-22 Protein kinase superfamily protein (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0016 PKinase PF01636 APH Phosphotransferase enzyme family
Representative CDS sequence
>Potri.005G197500.1 pacid=42804680 polypeptide=Potri.005G197500.1.p locus=Potri.005G197500 ID=Potri.005G197500.1.v4.1 annot-version=v4.1
ATGATTCGTCTGTTTAACTGGTCCGAGCCTCCGTGTGTGACTGTCTCACAGAATCTCACACGCAATCCCATCAGATTCTACTCGCGACGTTTTTTTATCA
TCAGCAAGGAGGAAACGCTAAAACTTTGTCACAACAAGCTTTTTCCTACAAAGATGGTGATGAAAACAAATGGATTCGTCGACGGTAGTTTACCTGATGA
GCTGAAGAAAGTCCTTCGATCAGTAGGATCGGAGTGGGGAGATGTGGTTGATGACATGGAATCATTGCAGGTGATACCTTTGAAGGGGGCTATGACTAAT
GAGGTTTTCCAGATAAACTGGCCTACAAAGTGTGGTAATCTTGATCGAAAATTAGTGGTTCGGATTTATGGTGAAGGTGTTGAAGCTTTTTTCAACAGGG
ATGATGAGATTAGGACTTTTGAGTGCATGTCAAAGCATGGACAAGGTCCTAGGCTTCTTGGCCGGTTTGCTGATGGAAGGGTTGAAGAGTTCATTCATGC
TAGAACACTATCAGCTGCTGATCTTCGTGACCATGAAATATCTGCTCTGGTGGCTGCGAAGATGAGAGAGTTCCACAATCTTGAGATGCCCGGTCCTAGG
ACTGTACTCCTCTGGAACAGGATGAGGGACTGGCTGGTTGAAGCCAAAAGCATGTGCTCTGCCAAATGTGTGAAAGAATTTCGTTTGGATAGTCTAGAAG
ATGAGATCAGTATGCTAGAGAAGGAGCTGTCACATGACTATCTAGATATTGGGTTTTGTCACAATGACCTGCAGTATGGTAACATAATGCTCGATGAAGA
GACAAGATCAATCACCTTAATCGATTATGAGTATGCAAGTTTCAATCCTGTTGCGTATGACCTTGCAAATCACTTCTGCGAAATGGTAGCGAATTATCAT
TCTGGAACGCCACATATCTTGGACTATAATAAATACCCAGGACTTGAGGAGCGCCGCAGATTTGTTGACACATATCTAAGTTCTGAAGGGAAGCAGCCCA
TTGAAGATGAAGCGGTGCTACTACTTCATGAGGTGGAAAGGTACACTCTGGCCAGCCATCTCTTTTGGGGATTATGGGGAATAATCTCGGGGTATGTAAA
CAAAATAGACTTCGACTATATGGAGTATGCTAGGCAAAGGTTTCGGCAGTATTGGCTGAGAAAGAAAAGACTCCTGGGATCCGCCGATAACTATGTAAAT
GGACATGTAGCGTACGGTACGGGATCGGGGTAA
AA sequence
>Potri.005G197500.1 pacid=42804680 polypeptide=Potri.005G197500.1.p locus=Potri.005G197500 ID=Potri.005G197500.1.v4.1 annot-version=v4.1
MIRLFNWSEPPCVTVSQNLTRNPIRFYSRRFFIISKEETLKLCHNKLFPTKMVMKTNGFVDGSLPDELKKVLRSVGSEWGDVVDDMESLQVIPLKGAMTN
EVFQINWPTKCGNLDRKLVVRIYGEGVEAFFNRDDEIRTFECMSKHGQGPRLLGRFADGRVEEFIHARTLSAADLRDHEISALVAAKMREFHNLEMPGPR
TVLLWNRMRDWLVEAKSMCSAKCVKEFRLDSLEDEISMLEKELSHDYLDIGFCHNDLQYGNIMLDEETRSITLIDYEYASFNPVAYDLANHFCEMVANYH
SGTPHILDYNKYPGLEERRRFVDTYLSSEGKQPIEDEAVLLLHEVERYTLASHLFWGLWGIISGYVNKIDFDYMEYARQRFRQYWLRKKRLLGSADNYVN
GHVAYGTGSG

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT4G09760 Protein kinase superfamily pro... Potri.005G197500
[exp]
0 1
AT1G53440 Leucine-rich repeat transmembr... Potri.003G025632
[exp]
3.74 0.9031
AT2G35980 NHL10, YLS9, AT... YELLOW-LEAF-SPECIFIC GENE 9, A... Potri.016G071600
[exp]
5.38 0.9099
AT1G07570 APK1A Protein kinase superfamily pro... Potri.008G056400
[exp]
7.34 0.8987
AT5G41610 ATCHX18 cation/H+ exchanger 18, ARABID... Potri.003G134900
[exp]
8.94 0.8977
AT2G01650 PUX2 plant UBX domain-containing pr... Potri.008G133700
[exp]
12.00 0.8656
AT1G05340 unknown protein Potri.016G019201
[exp]
12.72 0.8833
AT5G60900 RLK1 receptor-like protein kinase 1... Potri.019G011800
[exp]
14.49 0.8850
AT1G61560 ATMLO6, MLO6 MILDEW RESISTANCE LOCUS O 6, S... Potri.009G011900
[exp]
22.62 0.8837
AT3G22370 AtHSR3, ATAOX1A... hyper-sensitivity-related 3, a... Potri.015G019800
[exp]
26.26 0.8868
AT1G27100 Actin cross-linking protein (.... Potri.010G035100
[exp]
29.22 0.8360

Potri.005G197500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.