Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G71720 501 / 2e-174 PDE338 PIGMENT DEFECTIVE 338, Nucleic acid-binding proteins superfamily (.1) AT5G30510 103 / 1e-23 ARRPS1, RPS1 ribosomal protein S1 (.1) AT3G23700 48 / 1e-05 Nucleic acid-binding proteins superfamily (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G063400 [exp] 859 / 0 AT1G71720 514 / 2e-179 PIGMENT DEFECTIVE 338, Nucleic acid-binding proteins superfamily (.1) Potri.008G101100 [exp] 91 / 3e-19 AT5G30510 615 / 0.0 ribosomal protein S1 (.1) Potri.010G150300 [exp] 83 / 7e-17 AT5G30510 575 / 0.0 ribosomal protein S1 (.1) Potri.014G148500 [exp] 50 / 2e-06 AT3G23700 439 / 2e-153 Nucleic acid-binding proteins superfamily (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028726 [exp] 533 / 0 AT1G71720 506 / 8e-177 PIGMENT DEFECTIVE 338, Nucleic acid-binding proteins superfamily (.1) Lus10028698 [exp] 531 / 0 AT1G71720 516 / 0.0 PIGMENT DEFECTIVE 338, Nucleic acid-binding proteins superfamily (.1) Lus10017100 [exp] 86 / 2e-17 AT5G30510 590 / 0.0 ribosomal protein S1 (.1) Lus10037822 [exp] 82 / 2e-16 AT5G30510 583 / 0.0 ribosomal protein S1 (.1) Lus10022587 [exp] 61 / 7e-10 AT3G23700 374 / 3e-128 Nucleic acid-binding proteins superfamily (.1) Lus10021484 [exp] 56 / 4e-08 AT3G23700 197 / 4e-60 Nucleic acid-binding proteins superfamily (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0021 [poplar] [flax] OB PF00575 [poplar] [flax] S1 S1 RNA binding domain
Representative CDS sequence Show only first row Show all	>Potri.005G197900.1 pacid=42802501 polypeptide=Potri.005G197900.1.p locus=Potri.005G197900 ID=Potri.005G197900.1.v4.1 annot-version=v4.1 ATGCAAACCCTTCTTCAACCCTGTAAGTCTCTCACTATCTTCAGCTCCTCACTACCACCTCATAGCAACAACTTAGTTATCACGCAAAGTAGCATAGTCC ATCAAAACAAATGTCCAAAATCTCCGTGTTTTCACTCATTCTGTACTTCTGGCACTTCGGCCAAGAACCCCCCACTTTGGAGAAGTGCCCACATTTCATT ATGCTCTCAAAATGATGCATTTGATGATTTCTCGAGTACCCAACTGCCTGAAAAGGCACAGGATGATAGAATTCAAGAGAATGAGGAGCTAGAATTGTTA AATAAGCCATCTCCAGTGGTTTTTAATAATGGTTTAGATGTAGAAGCTGTTAAGGAATCTGAAAAACCTGGTAAAGATGAGGCCTTGGCGCCTTTTTTGA AGTTCTTTAAGTCTAATGATTCATTGGATGGAGTGAGTGAGGATGATGGTGATTCAGGTGTTGTAGAGGAGAGAATTGACATGGATAATGAAGATAAGGA GGCTAGGAAGATTAATGTGGATTATTATAACCCAAAACCTGGTGATTTTGTGGTTGGGGTTGTGGTTTCTGGTAATGAGAATAAACTTGATGTGAATATT GGGGCAGATTTGTTGGGTACGATGCTAACAAAGGAGGTGCTGCCTTTGTATGACAAAGAGTTCGAGTTTTTGTTGTGTGATACGAAGAAGGATGCCAAGG AGTTTATGGTTAAAGGGAAGATGGGAATTGTTAAGGATGATGTTGCAATGAGCAGGGGCCCACCAGGGTTAGGGAAGCCTGTTGTGGAGACTGGAACTGT GTTGTTTTCAGAGGTTCTTGGAAGGACACTGAGTGGAAGGCCACTGCTTTCCACTAGACGACTTTTCCGGCGGATAGCTTGGCAACGAGTGAGGCAGATC AAAGATCTGAATGAACCTATTGAGGTTAAAATTTCAGAATGGAATACTGGGGGCCTACTTACGAGAATTGAGGGATTGCGGGCTTTCCTGCCAAAGGCTG AGTTGTTGAATAGAGTAAACAATTTCAAGGAGTTGAAAGAAAATGTGGGTCGCCAAATATATGCACTGATTAATCGAATAAACGAGTCTAATAATGAGTT GATACTCAGTGAAAGGGAAGCTTGGGAAATGATAAACCTCAGGGAGGGAACACTTCTTGAAGGAACTGTTAAGAAACTTTTTCCATATGGAGCCCAAGTA AGAATAGGTGAAACTAACCGTAGCGGGCTGCTGCATGTCTCAAATATCACACGGACTCGTGTTTCATCTGTCAGTGACTTGCTTAAAGTTGATGAAAAGG TTAAAGTCCTAGTTGTAAAGTCAATGTTTCCTGACAAAATATCTCTCAGTATTGCTGACCTTGAAAGTGAGCCTGGTCTGTTTGTATCAAACAAGGAGAA AGTGTTTGCTGAGGCAGAAGAGATGGCAAAGAAGTACCAGCAAAATCTACAAGCGAGTTCAACAAATTTGAAGTCAGAAATCCCTTCAAGCAAGAATACC CTATCTTCTGACATTGAGGCAGCATTATATGCAAACTGGAAGTGGTTCAAATTTGAAAGGGAGTGA
AA sequence Show only first row Show all	>Potri.005G197900.1 pacid=42802501 polypeptide=Potri.005G197900.1.p locus=Potri.005G197900 ID=Potri.005G197900.1.v4.1 annot-version=v4.1 MQTLLQPCKSLTIFSSSLPPHSNNLVITQSSIVHQNKCPKSPCFHSFCTSGTSAKNPPLWRSAHISLCSQNDAFDDFSSTQLPEKAQDDRIQENEELELL NKPSPVVFNNGLDVEAVKESEKPGKDEALAPFLKFFKSNDSLDGVSEDDGDSGVVEERIDMDNEDKEARKINVDYYNPKPGDFVVGVVVSGNENKLDVNI GADLLGTMLTKEVLPLYDKEFEFLLCDTKKDAKEFMVKGKMGIVKDDVAMSRGPPGLGKPVVETGTVLFSEVLGRTLSGRPLLSTRRLFRRIAWQRVRQI KDLNEPIEVKISEWNTGGLLTRIEGLRAFLPKAELLNRVNNFKELKENVGRQIYALINRINESNNELILSEREAWEMINLREGTLLEGTVKKLFPYGAQV RIGETNRSGLLHVSNITRTRVSSVSDLLKVDEKVKVLVVKSMFPDKISLSIADLESEPGLFVSNKEKVFAEAEEMAKKYQQNLQASSTNLKSEIPSSKNT LSSDIEAALYANWKWFKFERE

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G71720		PDE338	PIGMENT DEFECTIVE 338, Nucleic...		Potri.005G197900 [exp]	0	1
AT2G31840		MRL7-L	Mesophyll-cell RNAi Library li...		Potri.007G145700 [exp]	1.41	0.9683
AT3G59040			Tetratricopeptide repeat (TPR)...		Potri.001G220300 [exp]	2.82	0.9708
AT3G04310			unknown protein		Potri.010G063300 [exp]	4.47	0.9596
AT3G02060			DEAD/DEAH box helicase, putati...		Potri.014G145000 [exp]	4.47	0.9569
AT1G17850			Rhodanese/Cell cycle control p...		Potri.015G029600 [exp]	5.91	0.9524
AT4G39620		ATPPR5, EMB2453	EMBRYO DEFECTIVE 2453, A. THAL...		Potri.005G082400 [exp]	6.70	0.9467
AT1G06950		ATTIC110, TIC11...	ARABIDOPSIS THALIANA TRANSLOCO...		Potri.019G127000 [exp]	6.92	0.9463
AT1G14030			Rubisco methyltransferase fami...		Potri.008G090500 [exp]	7.14	0.9634	RBCMT.1
AT2G15690			Tetratricopeptide repeat (TPR)...		Potri.014G038900 [exp]	8.71	0.9379
AT1G06510			unknown protein		Potri.005G203100 [exp]	11.00	0.9213

Compare expression of checked genes

Potri.005G197900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.