Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G34110 1382 / 0 Leucine-rich receptor-like protein kinase family protein (.1) AT3G24240 816 / 0 Leucine-rich repeat receptor-like protein kinase family protein (.1) AT5G48940 767 / 0 Leucine-rich repeat transmembrane protein kinase family protein (.1) AT5G56040 718 / 0 Leucine-rich receptor-like protein kinase family protein (.1.2) AT4G26540 704 / 0 Leucine-rich repeat receptor-like protein kinase family protein (.1) AT5G63930 602 / 0 Leucine-rich repeat protein kinase family protein (.1) AT1G17230 599 / 0 Leucine-rich receptor-like protein kinase family protein (.1) AT5G65700 585 / 0 BAM1 BARELY ANY MERISTEM 1, Leucine-rich receptor-like protein kinase family protein (.1.2) AT3G49670 577 / 0 BAM2 BARELY ANY MERISTEM 2, Leucine-rich receptor-like protein kinase family protein (.1) AT2G33170 554 / 3e-179 Leucine-rich repeat receptor-like protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G063300 [exp] 1704 / 0 AT1G34110 1400 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Potri.003G175700 [exp] 821 / 0 AT3G24240 1374 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1) Potri.001G052500 [exp] 815 / 0 AT3G24240 1367 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1) Potri.005G188700 [exp] 782 / 0 AT5G48940 1011 / 0.0 Leucine-rich repeat transmembrane protein kinase family protein (.1) Potri.002G070900 [exp] 760 / 0 AT3G24240 1004 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1) Potri.001G467300 [exp] 720 / 0 AT4G26540 1347 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1) Potri.012G088100 [exp] 718 / 0 AT5G56040 1005 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1.2) Potri.011G164800 [exp] 716 / 0 AT5G56040 1435 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1.2) Potri.015G080800 [exp] 714 / 0 AT5G56040 1019 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000509 [exp] 1471 / 0 AT1G34110 1464 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Lus10017782 [exp] 1469 / 0 AT1G34110 1467 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Lus10011756 [exp] 781 / 0 AT3G24240 1455 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1) Lus10028612 [exp] 739 / 0 AT5G48940 1051 / 0.0 Leucine-rich repeat transmembrane protein kinase family protein (.1) Lus10018911 [exp] 729 / 0 AT3G24240 1033 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1) Lus10032954 [exp] 725 / 0 AT5G56040 1399 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1.2) Lus10023677 [exp] 701 / 0 AT5G48940 1361 / 0.0 Leucine-rich repeat transmembrane protein kinase family protein (.1) Lus10019248 [exp] 569 / 0 AT5G65700 1479 / 0.0 BARELY ANY MERISTEM 1, Leucine-rich receptor-like protein kinase family protein (.1.2) Lus10039641 [exp] 557 / 0 AT5G65700 1580 / 0.0 BARELY ANY MERISTEM 1, Leucine-rich receptor-like protein kinase family protein (.1.2) Lus10013562 [exp] 545 / 2e-177 AT1G75820 1297 / 0.0 FLOWER DEVELOPMENT 5, FASCIATA 3, CLAVATA 1, Leucine-rich receptor-like protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF00069 [poplar] [flax] Pkinase Protein kinase domain CL0022 [poplar] [flax] LRR PF00560 [poplar] [flax] LRR_1 Leucine Rich Repeat CL0022 [poplar] [flax] PF08263 [poplar] [flax] LRRNT_2 Leucine rich repeat N-terminal domain CL0022 [poplar] [flax] LRR PF13855 [poplar] [flax] LRR_8 Leucine rich repeat
Representative CDS sequence Show only first row Show all	>Potri.005G198000.1 pacid=42804099 polypeptide=Potri.005G198000.1.p locus=Potri.005G198000 ID=Potri.005G198000.1.v4.1 annot-version=v4.1 ATGGATCAGAAGCCAACCCCACATTTTCTGTTGTTTTGCTCATTCTTGATAATAATGTTAACCATGACCAAAACATTTTTTGTAGCCTCTCTATCTTCTG ATGGAGAAGCCCTTCTTTCTCTTATCTCAGCGGCAGACCCATCAGCAAAAGCATCCTCATCAATCCTCTCCTCATGGAACCCATCAAGCCTGACTCCATG TTCTTGGCAAGGCATTACATGCTCTCCACAAAATAGAGTTATTTCCCTCTCTCTCCCTAACACATTCCTTAATCTTTCCTCACTGCCCTCGCAGCTATCC TCTCTTTCCTCTCTACAACTTCTCAACCTCTCCTCAACTAATATCTCTGGATCAATCCCTCCTTCTTTTGGCTTATTCATTCATCTTAGACTCTTAGACC TCTCCTCAAACTCTCTTTCAGGTCCTATACCGCAAGAAATTGGCCAGCTCTCTTCTCTTCAATTTCTTTACTTGAACTCCAATAAGTTATCTGGTAGGAT GCCTCCACAACTTGCAAACATTACTTCTTTACAAGTTCTTTGCTTGCAAGACAATCTCTTCAATGGTTCGATACCATCACAATTGGGTTCTTTAGTCTCG CTCCAAGAATTTAGAGTTGGTGGCAATCCTTATTTAACAGGAGAGATACCAACACAGTTAGGACTGTTAACCAATCTCACAACATTTGGTGCTGCAGCAA CCGGTCTTTCAGGCCAAATACCACCCACATTTGGGAACTTGATCAATCTTCAAACTTTGTCTCTTTATGATACTGAGGTATTTGGTTCTATACCACCTGA ACTTGGTTTGTGTTCAGAGTTAAGGAACTTGTACTTGCACATGAACAAGCTTACCGGTTCAATCCCTCCTCAGCTGGGTAAGTTGCAAGAACTTACTAGT TTGCTTCTATGGGGAAACGCACTCTCTGGAGCAATCCCAGCTGAGCTTTCAAACTGTTCATCACTTGTTGTGCTTGATGCTTCAGCTAATGATCTTTCCG GTGAAATACCTCGTGATTTAGGAAAGTTAGGGGTCCTTGAGCAGCTTCAGTTGTCCGATAACTCTCTTACTGGTCCGATTCCTTGGCAGTTGAGTAACTG TACAGGCTTAACAGCTCTTCAGCTTGATAAGAATCAATTGTCAGGTACAATTCCATGGCAGGTTGGCGATTTGAAGTATTTGCAAAGTTTCTTCTTGTGG GGAAATTCAGTGTCTGGTACGATACCAGCCTCCTTTGGAAACTGCACTGAGTTATATGCTCTTGATCTTTCAAGAAACAAGCTTACAGGCTCAATTCCAG AGGAGATTTTCAGTTTGAAGAAATTGAGCAAACTTCTGCTTCTAGGGAATTCTTTATCAGGTGGATTGCCGCGCAGTGTTGCATATTGTGAGTCTTTAGT GAGATTGAGGCTCGGAGAAAACCAGCTTTCTGGTCAGATTCCTAAGGAAATAGGCCAATTGCAGAATTTGGTATTTCTTGACTTGTATATGAATCAATTC TCTGGTGGCCTACCTTTGGAAATTGCCAACATCACTGTTCTTGAGCTGTTGGATGTGCACAAAAACTACATTACTGGAGAGATACCATCTCAGCTAGGAG AGCTTGTAAACTTGGAGCAGCTTGATCTTAGCAGGAACAGCTTCACAGGTGAAATTCCATGGAGTTTTGGAAACTTCAGTTACTTGAACAAGCTCATTCT CAATAACAATATGCTTGCAGGGGCAATCCCGAGGTCCATTCAAAACTTGCAGAAGCTAACACTGCTTGATTTGAACTCCAACAGCCTCTCTGGTCCAATC CCACTTGAAATTGGTTATGTCACGAGCTTAACAATTAGTTTGGATTTGAGCTCAAATGGATTTACTGGTGAACTCCCTGAAACGATGTCCAGCTTGACAC AGTTACAGTCACTTGATCTTTCCCATAATTTGCTTTATGGAAAGATCAAGGTTCTTGGTTCCCTTACTAGCCTCACTTCCCTTAATATCTCCTACAACAA TTTCTCAGGTCCTATTCCTGTAACACCATTCTTTAGAACTCTATCTTCAAATTCATACCTTCAAAACCCAAGACTTTGTGATTCCACAGATGGATATTCT TGCTCGCCTAGAACTAATCAAAGAAATGGATTAAAATCAGCCAAAACTATAGCTTTGATTTCGGTTATTCTCACTTCAGTGACCATAATTGTTATTGCTT CCTGGGTTATAGTCATGCGGAACCACAGGTATGTGATGGAGAAATCTTCTGGAGCATTAGCCACGTCATCGAGAGCTGAAGATTTCTCTTATCCATGGAC TTTTATCCCATTTCAGAAGCTCAACTTCACCATTGATAACATCCTAGATTGCTTGAAGGATGAGAATGTGATTGGGAAAGGCTGTTCTGGAATTGTCTAC AAGGCTGACATGCCAAATGGGCAGTTGATTGCAGTAAAAAAGCTTTGGAAGGCAAAGCAAGACGAGGATCCAGTGGATTCTTTTGCTGCAGAAATTCAAA TTCTTGGACACATTCGACATCGGAATATTGTGAAGCTTTTAGGTTATGCTTCGAATAGGAGTGTCAAGCTCCTTCTGTACAACTACATTTCAAATGGCAA TTTGCAGCAGCTGCTGCAGGGGAATAGGAATCTGGATTGGGAAACAAGGTACAAGATAGCTGTTGGTTCAGCTCAGGGTTTAGCTTATCTTCATCATGAT TGTGTGCCAGCAATTCTTCACAGAGATGTGAAGTGCAATAACATACTTCTGGATTCCAAGTATGAGGCTTATTTAGCAGATTTTGGCCTGGCCAAACTGA TGAACTCTCCAAATTATCATCATGCCATGTCCAGAGTTGCTGGTTCCTATGGTTATATAGCCCCAGAGTATGGATACACCATGAACATCACAGAAAAGAG TGATGTTTACAGTTATGGAGTGGTTTTGCTAGAGATCATAAGTGGTCGCAGCGCTGTTGAGCCTCAAGTAGGAGATGGATTACACATAGTTGAGTGGGTG AAGAAAAAGATGGGAAGCTTTGAACAAGCAGTATCAATACTAGATGCGAAGCTTCAAGGTTTGCCAGACCAAATGGTGCAGGAAATGCTGCAAACACTAG GGATTGCAATGTTCTGTGTGAACTCTTCGCCAGCAGAGCGGCCAACCATGAAGGAAGTGGTGGCATTGTTAATGGAAGTAAAGAGTCCACCAGAAGAATG GGGAAAGACTTCTCAACCTCTAATAAAATAG
AA sequence Show only first row Show all	>Potri.005G198000.1 pacid=42804099 polypeptide=Potri.005G198000.1.p locus=Potri.005G198000 ID=Potri.005G198000.1.v4.1 annot-version=v4.1 MDQKPTPHFLLFCSFLIIMLTMTKTFFVASLSSDGEALLSLISAADPSAKASSSILSSWNPSSLTPCSWQGITCSPQNRVISLSLPNTFLNLSSLPSQLS SLSSLQLLNLSSTNISGSIPPSFGLFIHLRLLDLSSNSLSGPIPQEIGQLSSLQFLYLNSNKLSGRMPPQLANITSLQVLCLQDNLFNGSIPSQLGSLVS LQEFRVGGNPYLTGEIPTQLGLLTNLTTFGAAATGLSGQIPPTFGNLINLQTLSLYDTEVFGSIPPELGLCSELRNLYLHMNKLTGSIPPQLGKLQELTS LLLWGNALSGAIPAELSNCSSLVVLDASANDLSGEIPRDLGKLGVLEQLQLSDNSLTGPIPWQLSNCTGLTALQLDKNQLSGTIPWQVGDLKYLQSFFLW GNSVSGTIPASFGNCTELYALDLSRNKLTGSIPEEIFSLKKLSKLLLLGNSLSGGLPRSVAYCESLVRLRLGENQLSGQIPKEIGQLQNLVFLDLYMNQF SGGLPLEIANITVLELLDVHKNYITGEIPSQLGELVNLEQLDLSRNSFTGEIPWSFGNFSYLNKLILNNNMLAGAIPRSIQNLQKLTLLDLNSNSLSGPI PLEIGYVTSLTISLDLSSNGFTGELPETMSSLTQLQSLDLSHNLLYGKIKVLGSLTSLTSLNISYNNFSGPIPVTPFFRTLSSNSYLQNPRLCDSTDGYS CSPRTNQRNGLKSAKTIALISVILTSVTIIVIASWVIVMRNHRYVMEKSSGALATSSRAEDFSYPWTFIPFQKLNFTIDNILDCLKDENVIGKGCSGIVY KADMPNGQLIAVKKLWKAKQDEDPVDSFAAEIQILGHIRHRNIVKLLGYASNRSVKLLLYNYISNGNLQQLLQGNRNLDWETRYKIAVGSAQGLAYLHHD CVPAILHRDVKCNNILLDSKYEAYLADFGLAKLMNSPNYHHAMSRVAGSYGYIAPEYGYTMNITEKSDVYSYGVVLLEIISGRSAVEPQVGDGLHIVEWV KKKMGSFEQAVSILDAKLQGLPDQMVQEMLQTLGIAMFCVNSSPAERPTMKEVVALLMEVKSPPEEWGKTSQPLIK

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G34110			Leucine-rich receptor-like pro...		Potri.005G198000 [exp]	0	1
AT5G04820	OFP	ATOFP13, OFP13	ARABIDOPSIS THALIANA OVATE FAM...		Potri.008G017500 [exp]	1.00	0.9319
AT2G26640		KCS11	3-ketoacyl-CoA synthase 11 (.1...		Potri.008G160000 [exp]	2.82	0.9272
AT3G54960		ATPDI1, ATPDIL1...	ARABIDOPSIS THALIANA PROTEIN D...		Potri.010G222100 [exp]	3.46	0.9162
AT5G67390			unknown protein		Potri.005G145800 [exp]	4.58	0.8956
AT3G48520		CYP94B3	cytochrome P450, family 94, su...		Potri.002G042100 [exp]	4.89	0.8900	Pt-CYP94.3
AT1G01120		KCS1	3-ketoacyl-CoA synthase 1 (.1)		Potri.002G178000 [exp]	6.00	0.9015	Pt-KCS1.1
AT1G03220			Eukaryotic aspartyl protease f...		Potri.008G203200 [exp]	6.92	0.8811
AT5G12460			Protein of unknown function (D...		Potri.009G051600 [exp]	7.07	0.8873
AT2G44930			Plant protein of unknown funct...		Potri.005G007500 [exp]	8.12	0.8815
AT4G24140		BDG3	alpha/beta-Hydrolases superfam...		Potri.003G147400 [exp]	10.48	0.9038

Compare expression of checked genes

Potri.005G198000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.