Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G71740 113 / 4e-33 unknown protein AT1G49000 47 / 3e-07 unknown protein AT3G14760 44 / 7e-06 unknown protein AT3G18560 43 / 1e-05 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G062950 [exp] 171 / 2e-56 AT1G71740 84 / 5e-22 unknown protein Potri.010G130600 [exp] 49 / 6e-08 AT1G49000 77 / 2e-18 unknown protein Potri.012G059500 [exp] 45 / 2e-06 AT1G49000 111 / 1e-31 unknown protein Potri.004G088300 [exp] 44 / 3e-06 AT1G49000 50 / 4e-08 unknown protein Potri.017G128700 [exp] 43 / 6e-06 AT3G18560 48 / 3e-07 unknown protein Potri.011G103500 [exp] 44 / 9e-06 AT3G14760 121 / 6e-35 unknown protein Potri.001G382800 [exp] 41 / 7e-05 AT3G14760 109 / 3e-30 unknown protein Potri.006G226200 [exp] 40 / 0.0002 ND /
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029742 [exp] 87 / 6e-23 AT1G71740 82 / 5e-21 unknown protein Lus10042773 [exp] 79 / 2e-19 AT1G71740 81 / 8e-21 unknown protein Lus10034266 [exp] 49 / 6e-08 AT1G71740 53 / 4e-09 unknown protein Lus10041497 [exp] 49 / 6e-08 AT1G71740 51 / 2e-08 unknown protein Lus10042496 [exp] 44 / 9e-06 AT3G14760 65 / 1e-12 unknown protein Lus10038145 [exp] 40 / 0.0001 AT3G14760 70 / 1e-14 unknown protein Lus10032453 [exp] 39 / 0.0005 AT1G49000 70 / 1e-14 unknown protein Lus10042953 [exp] 38 / 0.001 AT1G49000 67 / 8e-14 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.005G198200.1 pacid=42803781 polypeptide=Potri.005G198200.1.p locus=Potri.005G198200 ID=Potri.005G198200.1.v4.1 annot-version=v4.1 ATGGCACGCCAGCTTCTCTTGAAACAAATACCGCTAAGCTCATCAGGACTTGGCCTGCCTGCAGTGACTCTTCTCTTGTGTGCATTTGCCTTGTTCATGT GCGCTTCTCATTCTCGTAAATGGCGTCGTTGGAGTGCTTGTTATGGGCCCAGTGACCACGATCCTGTTATACAACTCAACACTGTAGATACGATGTTGGG CACAGGAGAACATGGCATCCATGCAGGCAGTCGTGATGACAGCATGTTCAGTGGTGAACAAGTAGTTTCAGTCTGGAGGAAGAACATACTCATGGGCTGG AAGTGTCAGCTACCTGATTTTTCAGGCGTCATCATTTATGACTCAGATGGAAACGTTGTCACCCCTGCCAAAAATCCTCGCCCACTCCTCACCTGGAAGT GA
AA sequence Show only first row Show all	>Potri.005G198200.1 pacid=42803781 polypeptide=Potri.005G198200.1.p locus=Potri.005G198200 ID=Potri.005G198200.1.v4.1 annot-version=v4.1 MARQLLLKQIPLSSSGLGLPAVTLLLCAFALFMCASHSRKWRRWSACYGPSDHDPVIQLNTVDTMLGTGEHGIHAGSRDDSMFSGEQVVSVWRKNILMGW KCQLPDFSGVIIYDSDGNVVTPAKNPRPLLTWK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G71740			unknown protein		Potri.005G198200 [exp]	0	1
AT5G15500			Ankyrin repeat family protein ...		Potri.018G050600 [exp]	6.48	0.8249
AT5G58770			Undecaprenyl pyrophosphate syn...		Potri.001G312700 [exp]	12.12	0.8346
AT5G23720		PHS1	PROPYZAMIDE-HYPERSENSITIVE 1, ...		Potri.012G105800 [exp]	20.68	0.7186	Pt-PHS1.1
AT3G47400			Plant invertase/pectin methyle...		Potri.012G126900 [exp]	30.19	0.7567
AT4G14650			unknown protein		Potri.010G081000 [exp]	30.28	0.7363
AT2G32300		UCC1	uclacyanin 1 (.1)		Potri.007G120200 [exp]	33.94	0.7909	Pt-UCC1.1
AT2G23690			unknown protein		Potri.009G110600 [exp]	49.30	0.7249
AT2G27510		ATFD3	ferredoxin 3 (.1)		Potri.008G020100 [exp]	58.80	0.7260	Pt-PETF.6
AT5G25460			Protein of unknown function, D...		Potri.001G174400 [exp]	66.24	0.7780
AT3G04860			Plant protein of unknown funct...		Potri.005G050000 [exp]	120.41	0.7263

Compare expression of checked genes

Potri.005G198200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.