Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G09730 742 / 0 RH39 RH39 (.1) AT3G06980 204 / 4e-56 DEA(D/H)-box RNA helicase family protein (.1) AT1G55150 186 / 9e-52 DEA(D/H)-box RNA helicase family protein (.1) AT3G01540 189 / 1e-51 ATDRH1, DRH1 ARABIDOPSIS THALIANA DEAD BOX RNA HELICASE 1, DEAD box RNA helicase 1 (.1.2.3.4) AT1G16280 185 / 3e-51 SWA3, AtRH36 SLOW WALKER 3, Arabidopsis thaliana RNA helicase 36, RNA helicase 36 (.1) AT1G31970 185 / 6e-51 STRS1 STRESS RESPONSE SUPPRESSOR 1, DEA(D/H)-box RNA helicase family protein (.1) AT5G60990 178 / 3e-49 DEA(D/H)-box RNA helicase family protein (.1) AT5G14610 182 / 5e-49 DEAD box RNA helicase family protein (.1.2) AT3G18600 178 / 3e-48 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT3G06480 181 / 7e-48 DEAD box RNA helicase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G038300 [exp] 186 / 1e-51 AT1G55150 790 / 0.0 DEA(D/H)-box RNA helicase family protein (.1) Potri.017G071400 [exp] 191 / 2e-51 AT5G14610 792 / 0.0 DEAD box RNA helicase family protein (.1.2) Potri.013G158000 [exp] 184 / 1e-50 AT1G55150 322 / 3e-104 DEA(D/H)-box RNA helicase family protein (.1) Potri.010G004700 [exp] 185 / 2e-50 AT3G06980 635 / 0.0 DEA(D/H)-box RNA helicase family protein (.1) Potri.001G347100 [exp] 187 / 3e-50 AT5G14610 823 / 0.0 DEAD box RNA helicase family protein (.1.2) Potri.006G249100 [exp] 178 / 2e-49 AT5G60990 619 / 0.0 DEA(D/H)-box RNA helicase family protein (.1) Potri.019G130900 [exp] 181 / 3e-49 AT1G55150 321 / 2e-103 DEA(D/H)-box RNA helicase family protein (.1) Potri.001G007900 [exp] 181 / 4e-49 AT2G42520 807 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.003G098800 [exp] 180 / 5e-49 AT1G31970 726 / 0.0 STRESS RESPONSE SUPPRESSOR 1, DEA(D/H)-box RNA helicase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017781 [exp] 783 / 0 AT4G09730 732 / 0.0 RH39 (.1) Lus10015627 [exp] 192 / 1e-53 AT1G55150 845 / 0.0 DEA(D/H)-box RNA helicase family protein (.1) Lus10037646 [exp] 192 / 1e-53 AT1G55150 843 / 0.0 DEA(D/H)-box RNA helicase family protein (.1) Lus10032135 [exp] 192 / 1e-52 AT5G14610 849 / 0.0 DEAD box RNA helicase family protein (.1.2) Lus10031761 [exp] 187 / 2e-52 AT5G60990 679 / 0.0 DEA(D/H)-box RNA helicase family protein (.1) Lus10032133 [exp] 188 / 3e-51 AT5G14610 850 / 0.0 DEAD box RNA helicase family protein (.1.2) Lus10031182 [exp] 184 / 3e-51 AT5G60990 674 / 0.0 DEA(D/H)-box RNA helicase family protein (.1) Lus10039091 [exp] 186 / 3e-50 AT3G06980 654 / 0.0 DEA(D/H)-box RNA helicase family protein (.1) Lus10015977 [exp] 181 / 1e-49 AT2G42520 738 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10006326 [exp] 181 / 2e-49 AT1G16280 673 / 0.0 SLOW WALKER 3, Arabidopsis thaliana RNA helicase 36, RNA helicase 36 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF00270 [poplar] [flax] DEAD DEAD/DEAH box helicase CL0023 [poplar] [flax] P-loop_NTPase PF00271 [poplar] [flax] Helicase_C Helicase conserved C-terminal domain
Representative CDS sequence Show only first row Show all	>Potri.005G198300.1 pacid=42804476 polypeptide=Potri.005G198300.1.p locus=Potri.005G198300 ID=Potri.005G198300.1.v4.1 annot-version=v4.1 ATGCAAAGAACCATGGCAGCTGCAAGCTCTTCAAGAACTCTACTAAACCTCTCTCTGTCTTCTTCGACCAAACTCTATCATACCTTTCTAAAACTCCCTA AAAAACCCTCTAGGGTTTTACTAGGGTTTAACTTTAGACCCTTGTGTACTTTGTCATCAACAACAGCAGCAACTGAACGGGATGAAGTAAAACACTCAAT CCTACTAGAGAGACTGAGACTTAGACACCTTAAAGGCTCTAAAAAACCCCAACTAACCGACACTCAAACACAAACCGCACTAAAACCAGTTGTTCTTATC GAGGGTGAAGAAGAAGAAGATGGGTTTAAGAAGTCTAAGAAAGGGAAAAAGATTGCGGGTAGTTTTGAGGAGTTGGGATTGAGTGAGGAGGTTATGGGGG CTGTTAAAGAGATGGGGATTGAGGTTCCTACTGAGATTCAATGTATTGGTATTCCTGCTATTTTGGATAGTAGAACTGTTGTCTTGGGTTCCCATACTGG GTCTGGAAAGACTCTGGCTTACATGTTGCCTCTTGTTCAGTTGCTGAGACGGGATGAGGCCTTGTTGGGTAGGCTAATGAAGCCCAGGCGTCCACGAGCT GTTGTTCTATGTCCCACAAGAGAACTATCTGAGCAGGTTTTTCGAGTGGCAAAATCTATTGGTCATCATGCACGTTTCAGGTCTACTATGGTCAGTGGGG GTGGCCGTATGAGACCCCAGGAGGATTCATTGAATAATCCAATTGACATGGTAGTGGGAACCCCTGGTAGGGTTCTTCAACATATTCAGGATGGGAACAT GGTTTATGGTGACATAAAATACTTGGTGTTGGATGAGGCAGACACCATGTTTGATCGTGGCTTTGGTCCTGACATTCACAAGTTTTTAGGCCCACTGAAA AATCGCACATCAAAATCTGATGGTCAAGGGTTTCAAACTATTTTAGTCACTGCAACAATGACAAAGGCAGTTCAAAAGCTGATTGATGAGGAGTTTCAAG GAATAGAGCATCTGCGCACGTCAACACTCCATAAAAAGATAGCATCTGCTCGTCATGATTTCATAAAGCTTTCAGGTTCTGAAAACAAGCTGGAAGCATT GTTGCAGGTTCTTGAGCCAAGTTTAGCGAAAGGAAATAGAGTGATGGTGTTCTGTAACACTTTGAATTCCAGCCGTGCTGCAGATCACTTTCTTGCTGAA AATCAGATCTCCACTGTCAATTACCATGGAGAGGTGCCAGCAGAACAGAGGGTTGAGAATCTGAATAAGTTTAAGAGCGATGATGGAGATTGCCCCACAT TGGTCTGCACAGACTTGGCTGCTAGAGGACTTGATTTAGATGTGGACCATGTCATCATGTTTGATTTCCCCTTGAACTCTATTGATTACCTACATCGCAC AGGAAGAACTGCTCGAATGGGTGCAAAAGGGAAAGTGACAAGCTTGGTGGCTAGAAAGGATCAACAGTTAGCTGCTCGGATTGAAGAGGCAATGAGGAAG AATGAGAGCTTGGAATCCCTCACTGTAGATAATGTTAGAAGAGACATTGCTAGGGCTCGAATAACCGAACAGCAGGGGAAGAGTGCAAAATTGATTAAAG CATCCAATCAGAAGAGCAATAATAAGTCAGCAACTGATAAACCTCCCAGTGCGCGGACCAAGGCTACATCTTCGGTGATGAAATCTGGAAAACCATCCAC CAGTGCACGGACCAAGGCATCCACCAGTGTGCGGACCAAGGCTACATCTTCGGTGAAGAAATATGGAAAAGCATCCACTCCAGCAAAATCTGTCAAGGCT GTTAAGGTTGCAAAACGAGTCAAATCCTCCAGTGCAAGCTACTCTAGAAAAACATCTCCAGGTGTGAAGAAGCAAGTGGGGAAGCTAAGAGTTGTGGCAT TTAGGGGGCGGTCTTCTTCATCTAACAAGAAAGAATCATTGAGGCCCAGTTGA
AA sequence Show only first row Show all	>Potri.005G198300.1 pacid=42804476 polypeptide=Potri.005G198300.1.p locus=Potri.005G198300 ID=Potri.005G198300.1.v4.1 annot-version=v4.1 MQRTMAAASSSRTLLNLSLSSSTKLYHTFLKLPKKPSRVLLGFNFRPLCTLSSTTAATERDEVKHSILLERLRLRHLKGSKKPQLTDTQTQTALKPVVLI EGEEEEDGFKKSKKGKKIAGSFEELGLSEEVMGAVKEMGIEVPTEIQCIGIPAILDSRTVVLGSHTGSGKTLAYMLPLVQLLRRDEALLGRLMKPRRPRA VVLCPTRELSEQVFRVAKSIGHHARFRSTMVSGGGRMRPQEDSLNNPIDMVVGTPGRVLQHIQDGNMVYGDIKYLVLDEADTMFDRGFGPDIHKFLGPLK NRTSKSDGQGFQTILVTATMTKAVQKLIDEEFQGIEHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVLEPSLAKGNRVMVFCNTLNSSRAADHFLAE NQISTVNYHGEVPAEQRVENLNKFKSDDGDCPTLVCTDLAARGLDLDVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVARKDQQLAARIEEAMRK NESLESLTVDNVRRDIARARITEQQGKSAKLIKASNQKSNNKSATDKPPSARTKATSSVMKSGKPSTSARTKASTSVRTKATSSVKKYGKASTPAKSVKA VKVAKRVKSSSASYSRKTSPGVKKQVGKLRVVAFRGRSSSSNKKESLRPS

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G09730		RH39	RH39 (.1)		Potri.005G198300 [exp]	0	1
AT2G30320			Pseudouridine synthase family ...		Potri.013G154200 [exp]	2.00	0.9371
AT2G47940		EMB3117, DEGP2	EMBRYO DEFECTIVE 3117, DEGP pr...		Potri.014G135200 [exp]	2.23	0.9260	Pt-DEGP2.2
AT1G36320			unknown protein		Potri.005G170400 [exp]	2.23	0.9439
AT4G31210			DNA topoisomerase, type IA, co...		Potri.006G279700 [exp]	4.00	0.9074
AT1G06950		ATTIC110, TIC11...	ARABIDOPSIS THALIANA TRANSLOCO...		Potri.019G127000 [exp]	7.14	0.9309
AT5G22640		EMB1211	embryo defective 1211, MORN (M...		Potri.009G149100 [exp]	7.48	0.9119
AT3G10690		GYRA	DNA GYRASE A (.1)		Potri.010G247000 [exp]	9.27	0.8755
AT1G80770		PDE318	pigment defective 318, P-loop ...		Potri.002G134900 [exp]	9.94	0.9032
AT4G32520		AtSHMT3, SHM3	serine hydroxymethyltransferas...		Potri.006G232300 [exp]	10.00	0.8952
AT5G55280		ATFTSZ1-1, CPFT...	CHLOROPLAST FTSZ, ARABIDOPSIS ...		Potri.001G359500 [exp]	10.58	0.9260	Pt-FTSZ.1

Compare expression of checked genes

Potri.005G198300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.