Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G22760 624 / 0 PAB3 poly(A) binding protein 3 (.1) AT1G71770 622 / 0 PAB5 poly(A)-binding protein 5 (.1), poly(A)-binding protein 5 (.2) AT2G23350 535 / 0 PABP4, PAB4 poly(A) binding protein 4 (.1) AT4G34110 535 / 0 PABP2, PAB2, ATPAB2 ARABIDOPSIS POLY\(A\) BINDING 2, poly(A) binding protein 2 (.1) AT1G49760 517 / 2e-176 PABP8, PAB8 poly(A) binding protein 8 (.1), poly(A) binding protein 8 (.2) AT2G36660 330 / 2e-104 PAB7 poly(A) binding protein 7 (.1) AT1G34140 313 / 2e-100 PAB1 poly(A) binding protein 1 (.1) AT3G16380 307 / 8e-97 PAB6 poly(A) binding protein 6 (.1) AT2G18510 108 / 2e-25 EMB2444 embryo defective 2444, RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT1G54080 103 / 3e-23 UBP1A oligouridylate-binding protein 1A (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G062700 [exp] 957 / 0 AT1G22760 638 / 0.0 poly(A) binding protein 3 (.1) Potri.014G025400 [exp] 633 / 0 AT1G49760 789 / 0.0 poly(A) binding protein 8 (.1), poly(A) binding protein 8 (.2) Potri.002G124200 [exp] 549 / 0 AT1G49760 822 / 0.0 poly(A) binding protein 8 (.1), poly(A) binding protein 8 (.2) Potri.009G099300 [exp] 533 / 0 AT4G34110 850 / 0.0 ARABIDOPSIS POLY\(A\) BINDING 2, poly(A) binding protein 2 (.1) Potri.001G304000 [exp] 517 / 9e-177 AT4G34110 837 / 0.0 ARABIDOPSIS POLY\(A\) BINDING 2, poly(A) binding protein 2 (.1) Potri.001G191500 [exp] 296 / 4e-92 AT3G16380 370 / 5e-122 poly(A) binding protein 6 (.1) Potri.002G128100 [exp] 115 / 2e-27 AT1G47490 404 / 6e-139 RNA-binding protein 47C (.1.2) Potri.014G034600 [exp] 115 / 3e-27 AT1G47490 439 / 2e-152 RNA-binding protein 47C (.1.2) Potri.007G028300 [exp] 113 / 6e-27 AT2G18510 453 / 4e-160 embryo defective 2444, RNA-binding (RRM/RBD/RNP motifs) family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010042 [exp] 625 / 0 AT4G34110 865 / 0.0 ARABIDOPSIS POLY\(A\) BINDING 2, poly(A) binding protein 2 (.1) Lus10010370 [exp] 614 / 0 AT4G34110 845 / 0.0 ARABIDOPSIS POLY\(A\) BINDING 2, poly(A) binding protein 2 (.1) Lus10002835 [exp] 537 / 0 AT4G34110 918 / 0.0 ARABIDOPSIS POLY\(A\) BINDING 2, poly(A) binding protein 2 (.1) Lus10027886 [exp] 520 / 1e-177 AT4G34110 922 / 0.0 ARABIDOPSIS POLY\(A\) BINDING 2, poly(A) binding protein 2 (.1) Lus10014392 [exp] 366 / 6e-118 AT2G36660 594 / 0.0 poly(A) binding protein 7 (.1) Lus10027733 [exp] 365 / 1e-117 AT2G36660 569 / 0.0 poly(A) binding protein 7 (.1) Lus10023885 [exp] 360 / 1e-115 AT2G36660 570 / 0.0 poly(A) binding protein 7 (.1) Lus10035556 [exp] 361 / 5e-111 AT2G36670 623 / 0.0 Eukaryotic aspartyl protease family protein (.1.2) Lus10021396 [exp] 272 / 6e-83 AT1G49760 351 / 6e-114 poly(A) binding protein 8 (.1), poly(A) binding protein 8 (.2) Lus10019838 [exp] 125 / 6e-31 AT1G49760 192 / 3e-55 poly(A) binding protein 8 (.1), poly(A) binding protein 8 (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0221 [poplar] [flax] RRM PF00076 [poplar] [flax] RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) CL0221 [poplar] [flax] PF00658 [poplar] [flax] PABP Poly-adenylate binding protein, unique domain
Representative CDS sequence Show only first row Show all	>Potri.005G198500.1 pacid=42805200 polypeptide=Potri.005G198500.1.p locus=Potri.005G198500 ID=Potri.005G198500.1.v4.1 annot-version=v4.1 ATGGCGGCAGCAGTTGCGGCACCAGCGGTTACGGCTCAACCAGCGGCAGTGGCTGCTACTGCATTGGGAACGGCTGAAGCAGGGCAGTTTCCGAATTCTT CGCTTTACGTTGGGGATCTGGAGCATAACGTTAACGAAGGACAACTGTTTGATCTGTTTAGCCAGGTGGCGCAGGTTGTTTCCATCAGGGTTTGTAGGGA TCAGGCTAGACGAGCCTCACTTGGTTATGCTTATGTCAATTTCAGCAATCCTCAAGATGCTGCAAATGCAATGGAGCTTCTGAACTTCACCCCTTTGAAT GGGAAAGCTATCAGAATTATGGTTTCCCATCGTGATCCTAGTATGAGGAAGAGTGGACATGCAAATGTCTTTATCAAGAACCTGGACACTTCAATCGATA ACAAGGCATTGCAGGAAACATTTGCTTCCTTTGGGCCTGTCCTTTCCTGCAAGGTAGCTGTTGACAACAATGGTCAATCAAAAGGTTATGGTTTTGTACA GTTTGAAAATGAGGAAGCTGCTCAAAGCGCAATCAACCGGTTGAACGGTATGCTGATAAATGATAAAGAAGTTTTTGTTGGACGTTTTGTTCGACACCAA GAAAGGATTGAGGCCACTGGATCACCAAAATTTACAAATGTTTATGTTAAGAATTTGTCGGAGACAACTTCTGATGAGGACCTTAAGAAATTCTTCAGCA ATTATGGTTCCATCACCAGTGCAATTGTTATGAAGGACCAAAGTGGGAAGTCCAAAGGTTTTGGTTTTGTGAACTTCCAGAGCCCAGATTCTGCTGCTGC TGCTGTTGAGAAGTTGAACGGGACCACCTTCAATGATAAGGTTTGGTATGTGGGGAGGGCCCAGAGGAAAGGAGAAAGGGAGGCAGAGTTGAAAGCCAGG TTTGAACAGGAAAGAAATAGCAGATATGAGAAACTGAAGGCTGCGAACCTGTATTTAAAAAATCTTGATGACAAAATTGATGATGAAAAACTGAAGGAAT TATTTTCTGAGTTTGGATCTATAACATCATGCAAGGTTATGCTTGATCAACAAGGACTGAGTAAGGGCTCTGGTTTTGTTGCCTTTTCTACACCTGAGGA AGCTTCAAGAGCTTTGAATGGAATGAATGGAAAGATGATAGGAAAGAAACCCCTGTATGTAGCCGTTGCCCAACGCAGAGAAGAGAGGAAGGCTCGGCTG CAGGCACATTTTACTCAAATTCAGGCACCTGGACTATCACCTATGCCTTCAGGGCTTTCTGGATATCATCCTGGGGCACCCAGGCTTGCACCACAGCAGC TCTTTTTTGGCCAAGGAACTGCCGGCATGATGCCCCCTCAGCCTGCAGGCTATGGTTTCCAGCAGCAACTTTTGCCTGGAATGCGTGCTGGTGTTGGCCC AAACTTTGTTATGCCATATCAGATGCAAAGGCAAGGACAACAAGGGCAGAGGATGGGTATTCGGCGTGGAGGGAACCACCAACAGATTCAGCAGCAACAG CAGCTATTGCACCGAAATACCAATCAAGGCTTAAGATACATGGGAAATGCAAGAAATGGCATAGATTCATCTGCAGCTCCCCAAGGTTTTGTTGGTCCAG TGGTGCCTTTTCCCTTTGAGGCATCAGGGATGCCTGTAACTCCTAGTGATGCCCAGCGAACCGCTCCAGTTCCCATCTCAGCTCTCACAACTGCTTTGGC GTCTGCTACACCAGAGAAGCGCATGGTGATGCTGGGTGAACAGCTCTATCCCCTCGTGGAACGTCTCGAGCCAGATCATGTGGCAAAGGTGACTGGGATG CTATTGGAGATGGATCAAACCGAGGTGCTACATCTTATTGAATCTCCCGATGCTCTCAAGAAAAAGGTGGCTGAGGCAATGCAAGTCCTTCAGGAAGTTG GTGCTTCTAGCGTTGGTGATCAGCTTGGTTCATTGGCACTCAATGACTGA
AA sequence Show only first row Show all	>Potri.005G198500.1 pacid=42805200 polypeptide=Potri.005G198500.1.p locus=Potri.005G198500 ID=Potri.005G198500.1.v4.1 annot-version=v4.1 MAAAVAAPAVTAQPAAVAATALGTAEAGQFPNSSLYVGDLEHNVNEGQLFDLFSQVAQVVSIRVCRDQARRASLGYAYVNFSNPQDAANAMELLNFTPLN GKAIRIMVSHRDPSMRKSGHANVFIKNLDTSIDNKALQETFASFGPVLSCKVAVDNNGQSKGYGFVQFENEEAAQSAINRLNGMLINDKEVFVGRFVRHQ ERIEATGSPKFTNVYVKNLSETTSDEDLKKFFSNYGSITSAIVMKDQSGKSKGFGFVNFQSPDSAAAAVEKLNGTTFNDKVWYVGRAQRKGEREAELKAR FEQERNSRYEKLKAANLYLKNLDDKIDDEKLKELFSEFGSITSCKVMLDQQGLSKGSGFVAFSTPEEASRALNGMNGKMIGKKPLYVAVAQRREERKARL QAHFTQIQAPGLSPMPSGLSGYHPGAPRLAPQQLFFGQGTAGMMPPQPAGYGFQQQLLPGMRAGVGPNFVMPYQMQRQGQQGQRMGIRRGGNHQQIQQQQ QLLHRNTNQGLRYMGNARNGIDSSAAPQGFVGPVVPFPFEASGMPVTPSDAQRTAPVPISALTTALASATPEKRMVMLGEQLYPLVERLEPDHVAKVTGM LLEMDQTEVLHLIESPDALKKKVAEAMQVLQEVGASSVGDQLGSLALND

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G22760		PAB3	poly(A) binding protein 3 (.1)		Potri.005G198500 [exp]	0	1
AT3G05520			Subunits of heterodimeric acti...		Potri.005G025300 [exp]	1.41	0.9200
AT1G09210		AtCRT1b	calreticulin 1b (.1)		Potri.013G009500 [exp]	4.89	0.8876
AT2G20840			Secretory carrier membrane pro...		Potri.019G104000 [exp]	5.09	0.9193
AT3G16060			ATP binding microtubule motor ...		Potri.001G182300 [exp]	6.63	0.8825
AT5G59305			unknown protein		Potri.009G029000 [exp]	7.48	0.8899
					Potri.001G297466 [exp]	10.81	0.9032
AT5G64570		ATBXL4, XYL4	ARABIDOPSIS THALIANA BETA-D-XY...		Potri.001G206800 [exp]	11.22	0.8688	XYL4.2
AT5G23860		TUB8, b-TUB	tubulin beta 8 (.1.2)		Potri.003G125400 [exp]	13.22	0.8958
AT1G14360		ATUTR3, UTR3	UDP-galactose transporter 3 (....		Potri.006G110500 [exp]	13.22	0.8651
AT1G69430			unknown protein		Potri.006G159000 [exp]	15.09	0.8822

Compare expression of checked genes

Potri.005G198500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.