Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G18400 251 / 4e-83 Cytokine-induced anti-apoptosis inhibitor 1, Fe-S biogenesis (.1.2.3) AT5G18362 87 / 2e-20 Cytokine-induced anti-apoptosis inhibitor 1, Fe-S biogenesis (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G062200 [exp] 404 / 1e-143 AT5G18400 234 / 7e-77 Cytokine-induced anti-apoptosis inhibitor 1, Fe-S biogenesis (.1.2.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010213 [exp] 217 / 4e-70 AT5G18400 214 / 4e-69 Cytokine-induced anti-apoptosis inhibitor 1, Fe-S biogenesis (.1.2.3) Lus10017411 [exp] 104 / 2e-25 AT3G19810 255 / 2e-81 Protein of unknown function (DUF177) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05093 [poplar] [flax] CIAPIN1 Cytokine-induced anti-apoptosis inhibitor 1, Fe-S biogenesis CL0063 [poplar] [flax] NADP_Rossmann PF08241 [poplar] [flax] Methyltransf_11 Methyltransferase domain
Representative CDS sequence Show only first row Show all	>Potri.005G198900.1 pacid=42803934 polypeptide=Potri.005G198900.1.p locus=Potri.005G198900 ID=Potri.005G198900.1.v4.1 annot-version=v4.1 ATGGATACTAAGAGAATGCTGCAGAATTCTGTACTGGCTTTAACAGATGATACTCTTATTTCAATTGGTACTGTAACAAATGCGGCAAGGGAGGTTGCCA ATGATGGAGTTGATCAGTGTGATCCTCAAATTATCACTCAAGCATCATCTCTAAGTAAGCTGCCATTGGAGCCTTCCTCCGTGGATATTGTCATTCCCAT CTTCAGATCAATTGAATTTCCTGGTGACCTGTTGGTAAAGGAAATGTTTAGAGTGTTGAAGCCTGGTGGAACCATTCTGATTTACAGTTCTCAGCAATCT GTTATAGGGGAAACTGACAAGGCAATTTCTGGTCTTCAGCGCAAGTTGCTTTTGGGTGGTTTCTTGGAAGCGGAAGCTCTACAACCAAAACCTGTTGGCC TCTCCAATGTCGTTTGTTCTTTTGGGGTCAAGGCCAAAAAACCTTCTTGGAATATTGGTTCATCCTTTGCACTAAAGAAATCTATAAAATCACCCGTCAA GGTTCAAAATGATGATTATTCAGATTTGATTGATGAGGATAGCCTTTTGACGGAAGAAGATTTGAAGAAACCTCAGCTACCACCTGTTGGTGATTGTGAG GTTGGAAGCACAAGGAAGGCTTGCAAGAACTGCACTTGTGGTAGAGCTGAGGAAGAGGAGAAAGTGAAGTTGGGACCGACTATGGATCAGCTGAGCAATC CACAATCAGCATGTGGCAGTTGTGGACTAGGGGATGCTTTTCGTTGCGGTACATGCCCTTACAAAGGTCTTCCCCCATTCAAACTTGGTGAAAAGGTTTC ACTGTCTGAAAACTTTCTCGTGGCAGACATTTGA
AA sequence Show only first row Show all	>Potri.005G198900.1 pacid=42803934 polypeptide=Potri.005G198900.1.p locus=Potri.005G198900 ID=Potri.005G198900.1.v4.1 annot-version=v4.1 MDTKRMLQNSVLALTDDTLISIGTVTNAAREVANDGVDQCDPQIITQASSLSKLPLEPSSVDIVIPIFRSIEFPGDLLVKEMFRVLKPGGTILIYSSQQS VIGETDKAISGLQRKLLLGGFLEAEALQPKPVGLSNVVCSFGVKAKKPSWNIGSSFALKKSIKSPVKVQNDDYSDLIDEDSLLTEEDLKKPQLPPVGDCE VGSTRKACKNCTCGRAEEEEKVKLGPTMDQLSNPQSACGSCGLGDAFRCGTCPYKGLPPFKLGEKVSLSENFLVADI

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G18400			Cytokine-induced anti-apoptosi...		Potri.005G198900 [exp]	0	1
AT1G15690		FUGU5, AtVHP1;1...	FUGU 5, ARABIDOPSIS THALIANA V...		Potri.006G063000 [exp]	4.00	0.8937	AVP.5
AT1G20010		TUB5	tubulin beta-5 chain (.1)		Potri.002G021800 [exp]	10.72	0.8795
AT4G35230		BSK1	BR-signaling kinase 1 (.1)		Potri.002G011800 [exp]	11.91	0.8905
AT1G33490			unknown protein		Potri.013G095200 [exp]	12.60	0.8874
AT3G13772		AtTMN7	transmembrane nine 7 (.1)		Potri.003G038700 [exp]	13.22	0.8769
AT1G15690		FUGU5, AtVHP1;1...	FUGU 5, ARABIDOPSIS THALIANA V...		Potri.018G119500 [exp]	14.42	0.8805
AT3G28480			Oxoglutarate/iron-dependent ox...		Potri.017G075100 [exp]	16.52	0.8428
AT1G63000		UER1, NRS/ER	"UDP-4-KETO-6-DEOXY-D-GLUCOSE-...		Potri.003G120000 [exp]	17.49	0.8792
AT1G33230			TMPIT-like protein (.1)		Potri.011G147500 [exp]	17.74	0.8717
AT5G61840		GUT1, IRX10-L	Exostosin family protein (.1)		Potri.012G109600 [exp]	19.49	0.8715

Compare expression of checked genes

Potri.005G198900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.