Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G36120 181 / 5e-58 atylmg3, CCB3 "cofactor assembly, complex C \(B6F\)", cofactor assembly, complex C (B6F) (.1) AT4G27990 44 / 2e-05 ATYLMG1-2 YGGT family protein (.1) AT3G07430 43 / 5e-05 ATYLMG1-1, EMB1990 embryo defective 1990, YGGT family protein (.1) AT5G21920 42 / 0.0001 ATYLMG2 YGGT family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G062100 [exp] 325 / 9e-115 AT5G36120 184 / 2e-59 "cofactor assembly, complex C \(B6F\)", cofactor assembly, complex C (B6F) (.1) Potri.002G250200 [exp] 45 / 1e-05 AT4G27990 210 / 2e-68 YGGT family protein (.1) Potri.006G220400 [exp] 40 / 0.0004 AT5G21920 222 / 1e-72 YGGT family protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013424 [exp] 168 / 2e-53 AT5G36120 172 / 1e-55 "cofactor assembly, complex C \(B6F\)", cofactor assembly, complex C (B6F) (.1) Lus10040969 [exp] 172 / 4e-52 AT3G19800 197 / 4e-61 Protein of unknown function (DUF177) (.1), Protein of unknown function (DUF177) (.2) Lus10009586 [exp] 43 / 7e-05 AT4G27990 204 / 2e-66 YGGT family protein (.1) Lus10020405 [exp] 42 / 0.0001 AT4G27990 199 / 1e-64 YGGT family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02325 [poplar] [flax] YGGT YGGT family
Representative CDS sequence Show only first row Show all	>Potri.005G199000.2 pacid=42805064 polypeptide=Potri.005G199000.2.p locus=Potri.005G199000 ID=Potri.005G199000.2.v4.1 annot-version=v4.1 ATGGCAGCATTATCTTCCCTCCACCACAACCAGAATCATATAAGATGGGCGCCTTTGATACACAAGAAAGCCAAATTTAATGTTTCTGAGAGGTTGAACT GCCCTACCAGAGGACATTCCAGCCAAGGCCATCAAGTCCTGTCGTCAAGGACGTGCTGCTTTACCAGAGTCGCAGCTTCTCTTAATGTAGACCTCGCAAT GTCACATGGAGACATATCAGGGGAGCCGTTTAGCATTCCTGAGGTTGTTGGGAATATCAACGTAGGCATACCAAAAACATCAGATGCTACCTCAAATTTA ATTCAGAGATTGATGCTGGCAGATTTAGACCCTGCCGCAGCGAAGTCAGCGGTAGGTATCTTGGGGCCATTCCTCTCAGCATTTTCCTTTCTATTTATTT TGAGGATAGTAATGTCATGGTACCCAAAGCTTCCTGTCGGGAAGTTTCCATATGTATTAGTTTATGCTCCCACAGAACCACTTCTCATTCCGACCAGAAA GTTGATTCCACCACTTGGAGGAGTGGATGTGACTCCTGTGGTATGGTTTGGGTTATTGAGTTTCCTCAACGAAATATTGGTCGGTCCTCAAGGGCTTCTG GTTCTTCTTTCTCAGCAGATTAGCTGA
AA sequence Show only first row Show all	>Potri.005G199000.2 pacid=42805064 polypeptide=Potri.005G199000.2.p locus=Potri.005G199000 ID=Potri.005G199000.2.v4.1 annot-version=v4.1 MAALSSLHHNQNHIRWAPLIHKKAKFNVSERLNCPTRGHSSQGHQVLSSRTCCFTRVAASLNVDLAMSHGDISGEPFSIPEVVGNINVGIPKTSDATSNL IQRLMLADLDPAAAKSAVGILGPFLSAFSFLFILRIVMSWYPKLPVGKFPYVLVYAPTEPLLIPTRKLIPPLGGVDVTPVVWFGLLSFLNEILVGPQGLL VLLSQQIS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G36120		atylmg3, CCB3	"cofactor assembly, complex C ...		Potri.005G199000 [exp]	0	1
AT2G34860		EDA3	embryo sac development arrest ...		Potri.001G009800 [exp]	4.00	0.9767
AT1G15140			FAD/NAD(P)-binding oxidoreduct...		Potri.010G116500 [exp]	8.06	0.9674
AT5G57170			Tautomerase/MIF superfamily pr...		Potri.006G075100 [exp]	8.48	0.9711
AT3G08010		ATAB2	RNA binding (.1)		Potri.009G059800 [exp]	8.48	0.9727
AT4G20360		AtRab8D, AtRABE...	RAB GTPase homolog E1B (.1)		Potri.003G121600 [exp]	9.89	0.9729
AT1G34000		OHP2	one-helix protein 2 (.1)		Potri.005G196100 [exp]	14.31	0.9566	OHP2.1
AT5G20935			unknown protein		Potri.009G155300 [exp]	14.83	0.9699
AT5G35100			Cyclophilin-like peptidyl-prol...		Potri.006G189900 [exp]	17.14	0.9686
AT4G18370		DEGP5, DEG5, HH...	PROTEASE HHOA PRECUSOR, DEGP p...		Potri.011G083300 [exp]	19.26	0.9685	Pt-HHOA.1
AT5G13510		EMB3136	EMBRYO DEFECTIVE 3136, Ribosom...		Potri.010G215900 [exp]	20.19	0.9684

Compare expression of checked genes

Potri.005G199000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.