Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-KDSA.2
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G79500 524 / 0 ATKDSA1, KDSA Aldolase-type TIM barrel family protein (.1.2.3.4.5) AT1G16340 514 / 0 ATKDSA2, ATKSDA Aldolase superfamily protein (.1.2.3.4)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G061900 [exp] 555 / 0 AT1G79500 531 / 0.0 Aldolase-type TIM barrel family protein (.1.2.3.4.5)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001765 [exp] 494 / 8e-171 AT1G79500 499 / 2e-172 Aldolase-type TIM barrel family protein (.1.2.3.4.5) Lus10027741 [exp] 374 / 6e-131 AT1G79500 369 / 4e-129 Aldolase-type TIM barrel family protein (.1.2.3.4.5) Lus10009595 [exp] 368 / 3e-129 AT1G79500 374 / 9e-132 Aldolase-type TIM barrel family protein (.1.2.3.4.5) Lus10009596 [exp] 370 / 2e-126 AT1G16340 376 / 3e-128 Aldolase superfamily protein (.1.2.3.4)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0036 [poplar] [flax] TIM_barrel PF00793 [poplar] [flax] DAHP_synth_1 DAHP synthetase I family
Representative CDS sequence Show only first row Show all	>Potri.005G199100.2 pacid=42805506 polypeptide=Potri.005G199100.2.p locus=Potri.005G199100 ID=Potri.005G199100.2.v4.1 annot-version=v4.1 ATGGATTCCTCAACTGCTTTGTTTGACCAGCTCAAGGTAGCAGAACCATTTTTCTTGTTAGCGGGACCCAATGTGATTGAATCTGAAGAACACATTCTTA GAATGGCCAACCATCTCAAGACTATCTCCACCAAAGTTGGGTTGCCACTGGTTTTTAAATCAAGCTTTGATAAAGCTAACAGGACATCCTCAAAATCATT TAGAGGTCCAGGAATGAGCGAAGGCTTGAAGATCCTTGAGAAGGTTAAAATAGCATATGACATCCCCATTGTTACTGATGTGCATGAAACAATTCAGTGT GAACCAGTTGGCAAAGTTGCAGATATCATTCAGATTCCAGCCTTTTTATGTCGTCAGACAGATCTTCTAGTTGCAGCTGCCAAGACTGGGAAAATTATCA ATATTAAGAAAGGCCAATTCTGTGCTCCTTCTGTCATGTCAAATTCTGCTGAGAAGGTAAGATTGGCTGGAAATCCAAATGTCATGGTTTGTGAGAGGGG AACTATGTTTGGCTATAGTGATTTGATTGTTGATCCGCGTAATTTGGAATGGATCAGGGAAGCTAATTGTCCTGTTGTAGCTGACATCACACATTCACTA CAACAGCCTGCTGGGAGAAAGTTGGATGGTGGAGGTGTTGCTAGTGGAGGTCTTCGTGAATTGATACCATGCATTGCAAGGACAGCAGTGGCCGTTGGGG TGGATGGAATTTTCATGGAGGTTCATGATGATCCTCTGAATGCCCCGGTGGATGGTCCAACTCAGTGGCCTCTACGCCATTTAGAGGAGCTGCTAGAAGA GCTTGTGGCAATAGCTAAGGTAAGCAAGGGGAAGAAACCGATGAACATTGATCTCACACCATTTCACGAATAG
AA sequence Show only first row Show all	>Potri.005G199100.2 pacid=42805506 polypeptide=Potri.005G199100.2.p locus=Potri.005G199100 ID=Potri.005G199100.2.v4.1 annot-version=v4.1 MDSSTALFDQLKVAEPFFLLAGPNVIESEEHILRMANHLKTISTKVGLPLVFKSSFDKANRTSSKSFRGPGMSEGLKILEKVKIAYDIPIVTDVHETIQC EPVGKVADIIQIPAFLCRQTDLLVAAAKTGKIINIKKGQFCAPSVMSNSAEKVRLAGNPNVMVCERGTMFGYSDLIVDPRNLEWIREANCPVVADITHSL QQPAGRKLDGGGVASGGLRELIPCIARTAVAVGVDGIFMEVHDDPLNAPVDGPTQWPLRHLEELLEELVAIAKVSKGKKPMNIDLTPFHE

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G79500		ATKDSA1, KDSA	Aldolase-type TIM barrel famil...		Potri.005G199100 [exp]	0	1	Pt-KDSA.2
AT1G79500		ATKDSA1, KDSA	Aldolase-type TIM barrel famil...		Potri.002G061900 [exp]	1.73	0.9536	KDSA.1
AT5G57330			Galactose mutarotase-like supe...		Potri.001G037700 [exp]	3.74	0.9371
AT4G34700		CIB22, AtCIB22	B22 subunit of eukaryotic mito...		Potri.004G163000 [exp]	8.94	0.9170
AT4G02580			NADH-ubiquinone oxidoreductase...		Potri.005G218000 [exp]	9.79	0.9218
AT3G55770	LIM	WLIM2b	WLIM2b, GATA type zinc finger ...		Potri.010G193800 [exp]	10.39	0.9194
AT1G23030		PUB11	ARM repeat superfamily protein...		Potri.008G128600 [exp]	10.81	0.9312
AT3G55440		CYTOTPI, ATCTIM...	CYTOSOLIC ISOFORM TRIOSE PHOSP...		Potri.009G031200 [exp]	11.48	0.9296
AT1G60070			Adaptor protein complex AP-1, ...		Potri.016G104700 [exp]	11.83	0.9276
AT5G32450			RNA binding (RRM/RBD/RNP motif...		Potri.013G055100 [exp]	12.64	0.9000
AT5G51150			Mitochondrial import inner mem...		Potri.015G111200 [exp]	12.72	0.8824

Compare expression of checked genes

Potri.005G199100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.