Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G22730 823 / 0 MA3 domain-containing protein (.1) AT5G63190 659 / 0 MA3 domain-containing protein (.1.2) AT4G24800 643 / 0 ECIP1 EIN2 C-terminus Interacting Protein 1, MA3 domain-containing protein (.1.2.3) AT3G48390 630 / 0 MA3 domain-containing protein (.1) AT5G57870 65 / 2e-10 eIFiso4G1 eukaryotic translation Initiation Factor isoform 4G1, MIF4G domain-containing protein / MA3 domain-containing protein (.1.2) AT4G30680 55 / 7e-08 Initiation factor eIF-4 gamma, MA3 (.1) AT3G60240 54 / 5e-07 CUM2, EIF4G CUCUMOVIRUS MULTIPLICATION 2, eukaryotic translation initiation factor 4G (.2.3.4) AT2G24050 52 / 1e-06 eIFiso4G2 eukaryotic translation Initiation Factor isoform 4G2, MIF4G domain-containing protein / MA3 domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G088300 [exp] 711 / 0 AT4G24800 1008 / 0.0 EIN2 C-terminus Interacting Protein 1, MA3 domain-containing protein (.1.2.3) Potri.012G091900 [exp] 704 / 0 AT5G63190 1022 / 0.0 MA3 domain-containing protein (.1.2) Potri.002G061800 [exp] 93 / 7e-23 AT1G22730 74 / 4e-17 MA3 domain-containing protein (.1) Potri.018G104100 [exp] 60 / 7e-09 AT5G57870 882 / 0.0 eukaryotic translation Initiation Factor isoform 4G1, MIF4G domain-containing protein / MA3 domain-containing protein (.1.2) Potri.006G182100 [exp] 57 / 4e-08 AT5G57870 884 / 0.0 eukaryotic translation Initiation Factor isoform 4G1, MIF4G domain-containing protein / MA3 domain-containing protein (.1.2) Potri.006G265300 [exp] 54 / 3e-07 AT5G57870 790 / 0.0 eukaryotic translation Initiation Factor isoform 4G1, MIF4G domain-containing protein / MA3 domain-containing protein (.1.2) Potri.018G017600 [exp] 53 / 6e-07 AT5G57870 809 / 0.0 eukaryotic translation Initiation Factor isoform 4G1, MIF4G domain-containing protein / MA3 domain-containing protein (.1.2) Potri.002G140200 [exp] 52 / 2e-06 AT3G60240 942 / 0.0 CUCUMOVIRUS MULTIPLICATION 2, eukaryotic translation initiation factor 4G (.2.3.4) Potri.014G052600 [exp] 49 / 1e-05 AT3G60240 998 / 0.0 CUCUMOVIRUS MULTIPLICATION 2, eukaryotic translation initiation factor 4G (.2.3.4)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011324 [exp] 944 / 0 AT1G22730 816 / 0.0 MA3 domain-containing protein (.1) Lus10018085 [exp] 662 / 0 AT4G24800 995 / 0.0 EIN2 C-terminus Interacting Protein 1, MA3 domain-containing protein (.1.2.3) Lus10042080 [exp] 659 / 0 AT4G24800 974 / 0.0 EIN2 C-terminus Interacting Protein 1, MA3 domain-containing protein (.1.2.3) Lus10012205 [exp] 650 / 0 AT1G22730 560 / 0.0 MA3 domain-containing protein (.1) Lus10012204 [exp] 140 / 3e-38 AT1G22730 117 / 1e-30 MA3 domain-containing protein (.1) Lus10035812 [exp] 54 / 3e-08 AT2G24050 228 / 3e-71 eukaryotic translation Initiation Factor isoform 4G2, MIF4G domain-containing protein / MA3 domain-containing protein (.1) Lus10010782 [exp] 57 / 5e-08 AT5G57870 952 / 0.0 eukaryotic translation Initiation Factor isoform 4G1, MIF4G domain-containing protein / MA3 domain-containing protein (.1.2) Lus10022168 [exp] 57 / 6e-08 AT5G57870 976 / 0.0 eukaryotic translation Initiation Factor isoform 4G1, MIF4G domain-containing protein / MA3 domain-containing protein (.1.2) Lus10036594 [exp] 54 / 4e-07 AT5G57870 625 / 0.0 eukaryotic translation Initiation Factor isoform 4G1, MIF4G domain-containing protein / MA3 domain-containing protein (.1.2) Lus10028156 [exp] 49 / 3e-05 AT3G60240 1275 / 0.0 CUCUMOVIRUS MULTIPLICATION 2, eukaryotic translation initiation factor 4G (.2.3.4)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF02847 [poplar] [flax] MA3 MA3 domain
Representative CDS sequence Show only first row Show all	>Potri.005G199200.2 pacid=42803412 polypeptide=Potri.005G199200.2.p locus=Potri.005G199200 ID=Potri.005G199200.2.v4.1 annot-version=v4.1 ATGGAATATAGTGATGGTTTCGTATCAAAAGAGCATCGGGAGCTTGCACGATCTGCTTCAGAGAGTGCAGATCCATTGTCTGTATCTCTATTGCAGATCT CAATTCATACAAAGTCTGCAAATTCTCCAAATTCTCCAAGGTCACCAAACCGAACTGGCTCGAGCAGGGGAAGTCCTAGCAAGGGAGGTCCTGGCAAGTG TGAAAGGCATTCACATTCTCCAAAAGACGGGCGTCCTAAAAAAGGTGGTTCAGGCGGTAAAGGAACATGGGGAGGGCTTCTTGACGTCGATGATAGCCAT TCTCTTGATCCAAAGGACCCAAACTTTGATAGCAGTGAGGAATGCGATCATACAACTGTGAGAAAATCGACAACGGATTTTCTGGAGTTCAAAAAGAATG TTACAGTTATAGTAGAGGAATATTTTGCAACTGATGATATTGTCTCAACTGCCAACGAATTGAGAGAACTTGAAATGTCTGGCTACCACTATTATTTTGT GAAGAAACTTGTCTCTATGGCCATGGACAGGGACGATAAAGAGAAGGAAATGGCTGCTGTTCTTTTGTCTGCTCTGTATGCTGACATCATCGACCCCCAA CAAGTTTACAGAGGCTTTTGTAAACTGGTGGAATCTGCAGATGACTTAATTGTAGATATACCTGAAACCGTTGATGTTCTTGCACTGTTCATAGCAAGAG CTGTGGTTGATGACATGCTCCCACCTGCTTTTTTGAAAAAACAGATGGCGTCTCTACCTGAAGATTCTAAGGGGGTTGCTGTGCTAAAAAGAGCTGAAAA GGGCTATCTATCAGCCCCTCATCATGCAGAAATTATTGAGCGGCGATGGGGAGGTGGCATGAAAAAAACAGTCGAGGATGTGAAGGCTAAGATTGACAAT TTACTGCAAGAGTATGCTGTGAGTGGCGACAGGAAAGAGGCTTGCAGATGCATCAAGGATTTGAAAGTTCCATTCTTTCACCATGAAATAGTTAAAAGGT CGCTTATAATGGCAATGGAGAGGAAGCAAGCTGAAGGCCGGCTACTAGATTTGTTGAAGGAAGCCTCTGAAGAAGGTTTGATTAATTCAAGCCAAACATC GAAAGGATTTGGCAGGATGATTGATTCTGTAGATGACTTATCACTAGACATCCCAAATGCACGCAGGATATTACAGTCCTTGATATCTAAAGCTGCATCA GAGGGCTGGCTGTGTGCTTCATCTTTGAAGTCGCTTGGACCAACACCAGTGAAAGGATCTTTGCAAGATGATTCAGCCAAGATTTTCAAGTTGAAAGCTC AATCTATTATTCAAGAATATTTCTTATCTGGTGATATTTCAGAGGTCGGTAGTTGTCTCGGATCAGAGAACAATGCTTATTCGGCGGAACTAAATGCCAT TTTCATTAAAAGGCTGATAACTCTTGCAATGGATCGAAAAAATAGGGAGAAGGAAATGGCTTCCGTTTTGCTTTCATCTTTGTGTTTCCCATCAGATGAT GTCGTGAACGGGTTTATTATGTTGATAGAATCAGCAGATGACACTGCTCTTGACAATCCAGTGGTTGTTGAGGATCTTGCAATGTTTCTGGCAAGAGCAG TGGTGGATGAAGTGTTGGCGCCACGACAGTTGGAGGAAATTGGAACCCAGTTTTCGGGGCCAGAGTCAATTGGGAGGAAAGTCCTTCAAATGGCAAAGTC ATCGTTAAAGGCACGACTTTCTGGGGAGCGGATCTTAAGGTGCTGGGGTGGTGGGAGAACTGGCAGTCCTGGATGGGACATTGAAGATGTCAAGGACAAA GTTGGAAGGCTGCTGGAGGAGTTTGAATCTGGAGGAGATATTGGGGAGGCTTGTCGCTGCATAAAGGAATTAAGCATGCCATTTTTCCACCATGAGGTTG TCAAGAAAGCATTAGTGGCGATAATTGAGAAAAAGAATGAAAGGTTGTGGGGCTTACTTGATCAATGCTTTAGTTCAGGCCTCATAACCACATGTCAGAT GATGAAGGGTTTCGGGAGGGTGGCAGAATCTCTGGATGACCTGGCTCTGGATGTGCCTGATGCTGAGAAACAATTCAAACATTATGTCGAGAGAGCTACG CTTGCAGGGTGGTTAGATTCTTCCTTCTGTTTAAGCAAATCAGGACCTACCAAAGAGAATGGCGCCTATCTATGA
AA sequence Show only first row Show all	>Potri.005G199200.2 pacid=42803412 polypeptide=Potri.005G199200.2.p locus=Potri.005G199200 ID=Potri.005G199200.2.v4.1 annot-version=v4.1 MEYSDGFVSKEHRELARSASESADPLSVSLLQISIHTKSANSPNSPRSPNRTGSSRGSPSKGGPGKCERHSHSPKDGRPKKGGSGGKGTWGGLLDVDDSH SLDPKDPNFDSSEECDHTTVRKSTTDFLEFKKNVTVIVEEYFATDDIVSTANELRELEMSGYHYYFVKKLVSMAMDRDDKEKEMAAVLLSALYADIIDPQ QVYRGFCKLVESADDLIVDIPETVDVLALFIARAVVDDMLPPAFLKKQMASLPEDSKGVAVLKRAEKGYLSAPHHAEIIERRWGGGMKKTVEDVKAKIDN LLQEYAVSGDRKEACRCIKDLKVPFFHHEIVKRSLIMAMERKQAEGRLLDLLKEASEEGLINSSQTSKGFGRMIDSVDDLSLDIPNARRILQSLISKAAS EGWLCASSLKSLGPTPVKGSLQDDSAKIFKLKAQSIIQEYFLSGDISEVGSCLGSENNAYSAELNAIFIKRLITLAMDRKNREKEMASVLLSSLCFPSDD VVNGFIMLIESADDTALDNPVVVEDLAMFLARAVVDEVLAPRQLEEIGTQFSGPESIGRKVLQMAKSSLKARLSGERILRCWGGGRTGSPGWDIEDVKDK VGRLLEEFESGGDIGEACRCIKELSMPFFHHEVVKKALVAIIEKKNERLWGLLDQCFSSGLITTCQMMKGFGRVAESLDDLALDVPDAEKQFKHYVERAT LAGWLDSSFCLSKSGPTKENGAYL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G22730			MA3 domain-containing protein ...		Potri.005G199200 [exp]	0	1
					Potri.010G076150 [exp]	2.00	0.9041
AT1G20270			2-oxoglutarate (2OG) and Fe(II...		Potri.002G016700 [exp]	3.46	0.8786
					Potri.010G159650 [exp]	6.48	0.8632
AT4G18020	GARP	APRR2	PSEUDO-RESPONSE REGULATOR 2, C...		Potri.003G087700 [exp]	6.70	0.8634	PtpRR10
AT1G42540		ATGLR3.3	glutamate receptor 3.3 (.1)		Potri.002G007400 [exp]	8.12	0.8328	GLR3.2
					Potri.007G020732 [exp]	9.16	0.8560
AT2G38080		ATLMCO4, IRX12,...	LACCASE 4, IRREGULAR XYLEM 12,...		Potri.008G064000 [exp]	9.94	0.8471	LAC2.1,LAC2
AT4G02680		EOL1	ETO1-like 1 (.1)		Potri.005G214400 [exp]	11.83	0.7981
AT3G48660			Protein of unknown function (D...		Potri.015G098300 [exp]	12.32	0.8147
AT2G23360			Plant protein of unknown funct...		Potri.007G046100 [exp]	13.03	0.8409

Compare expression of checked genes

Potri.005G199200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.