Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G34160 702 / 0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G21065 473 / 4e-161 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) AT5G40405 442 / 4e-149 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G02980 440 / 2e-148 OTP85 ORGANELLE TRANSCRIPT PROCESSING 85, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G26782 439 / 3e-147 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G37380 436 / 2e-146 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G47530 433 / 1e-145 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT4G30700 439 / 2e-145 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G46790 432 / 1e-144 CRR2 CHLORORESPIRATORY REDUCTION 2, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G48910 431 / 3e-144 LPA66 LOW PSII ACCUMULATION 66, Pentatricopeptide repeat (PPR) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G168800 [exp] 477 / 8e-163 AT2G02980 860 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 85, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.017G001000 [exp] 473 / 6e-161 AT4G21065 793 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Potri.016G077700 [exp] 472 / 9e-161 AT4G30700 489 / 1e-164 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.013G044700 [exp] 473 / 3e-158 AT3G22690 582 / 0.0 unknown protein Potri.009G044700 [exp] 467 / 5e-157 AT2G29760 1013 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.001G369900 [exp] 457 / 1e-154 AT5G66520 512 / 2e-175 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.018G071800 [exp] 460 / 2e-154 AT1G08070 606 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.001G135400 [exp] 454 / 1e-153 AT1G31920 738 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.016G029500 [exp] 452 / 4e-153 AT3G56550 740 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029401 [exp] 877 / 0 AT1G34160 674 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10004197 [exp] 724 / 0 AT1G34160 543 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10018223 [exp] 448 / 1e-149 AT2G29760 931 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10040680 [exp] 446 / 8e-149 AT2G29760 926 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10013319 [exp] 441 / 1e-148 AT4G21065 744 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Lus10037387 [exp] 440 / 2e-148 AT3G56550 700 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10005207 [exp] 441 / 7e-148 AT4G21065 741 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Lus10041326 [exp] 437 / 5e-147 AT3G56550 702 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10029344 [exp] 435 / 4e-146 AT5G06540 803 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10020743 [exp] 436 / 7e-146 AT1G04840 771 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF01535 [poplar] [flax] PPR PPR repeat CL0020 [poplar] [flax] TPR PF13041 [poplar] [flax] PPR_2 PPR repeat family CL0109 [poplar] [flax] CDA PF14432 [poplar] [flax] DYW_deaminase DYW family of nucleic acid deaminases
Representative CDS sequence Show only first row Show all	>Potri.005G199800.1 pacid=42803346 polypeptide=Potri.005G199800.1.p locus=Potri.005G199800 ID=Potri.005G199800.1.v4.1 annot-version=v4.1 ATGGCCAGCTCGCTAGACTCCTTTCTGTCAAAGTGCACCACTCTCTCTCTCCCCCACACAAAACAACTCCATGCACACCTCTTCACCACAGGTCAATTCC AACTTCCCATCTCCCCTGCCCGCTCCAAACTTCTCGAACTCTACGCTCTCTCTCTCGGCAACCTCTCCTTTGCTATTTTAACCTTTTCCCAAATCCGCAC TCCTTCCACCAACGACTGGAACGCCATCATCCGTGGCTTCATTCAAAGCCCAAACCCAACTAATGCTTTCGCATGGTACAAATCTATGATCTCTAAATCC CGCAAAGTAGACGCCTTAACTTGCTCTTTTGTTTTAAAAGCATGCGCTCGTGTTTTAGCTCGTTTAGAGTCGATTCAAATTCATACCCATATTGTGCGCA AAGGGTTTATAGCTGATGCTTTGTTGGGTACAACTCTGTTAGATGTTTATGCGAAAGTGGGTGAAATCGATAGTGCAGAGAAGGTGTTTGATGAAATGGT TAAGCGAGATATTGCATCATGGAATGCATTGATTTCTGGGTTTGCTCAAGGGAGTAAGCCTACTGAGGCTTTGAGTTTGTTCAAGAGAATGGAGATTGAT GGGTTTAAACCTAATGAAATCTCAGTTCTTGGCGCTCTCTCTGCGTGTGCACAATTGGGTGATTTTAAAGAAGGTGAGAAAATTCATGGATATATTAAAG TTGAACGGTTCGATATGAATGCACAGGTTTGTAATGTGGTTATTGACATGTATGCTAAATGTGGGTTTGTTGACAAAGCTTATTCGGTTTTCGAGAGTAT GAGTTGCAGGAAGGATATTGTTACATGGAATACAATGATCATGGCATTTGCAATGCATGGTGAAGGGTGTAAAGCTCTTGAGCTTTTTGAGAAAATGGAC CAATCCGGGGTGAGCCCAGATGATGTGTCGTATCTTGCGGTACTATGCGCTTGTAACCATGGCGGATTAGTTGAAGAAGGGTTTAGGCTGTTTAATTCAA TGGAGAATTGTGGAGTGAAACCTAATGTTAAACATTATGGGAGTGTAGTTGATTTGTTAGGCCGAGCTGGGCGGCTTCATGAGGCCTATGATATTGTCAA TTCTATGCCGACGGTGCCCGATATAGTGCTCTGGCAAACTTTGCTTGGTGCTTCCAGGACTCATAGGAATGTAGAAATAGCCGAAACCGTTTCTCGGAAG CTTGTGGAGATGGGATCTAATCATTGTGGTGATTTTGTTTTGTTATCTAATGTTTATGCAGCACGTGAGAGGTGGGCTGATGTGGGGAGGGTAAGGGAGG CAATGAAGAACAGGGATGTGAAGAAGGTGCCTGGACTCAGCTACATTGAAGGTAATGGTGTAATACACAAGTTCTACAATGCTGATAAGAGTCATGAAAG TTGGAGGGAGATTTATGCAAAGTTGGATGAGATTAGGTTCAGGGTCAAGGAATATGGGTATGTGGCTGAAACAAGCTTTGTGCTGCATGATATAGGGGAG GAGGACAAGGAAAATGTTTTGGGTCATCATAGTGAGAAGTTAGCTGTGGCTTTTGGTTTGATTAGTACGAGTGAGGGAACACCAATACAAGTGATTAAGA ACCTTAGGATATGCGGGGATTGTCATTTTGTGATCAAGCTTATATCAAAGATATATGATCGAGAAATCATTGTGAGGGATAGAGTGCGGTTTCACAGATT TAAAGAAGGTTTCTGTTCTTGCAGAGATTATTGGTAG
AA sequence Show only first row Show all	>Potri.005G199800.1 pacid=42803346 polypeptide=Potri.005G199800.1.p locus=Potri.005G199800 ID=Potri.005G199800.1.v4.1 annot-version=v4.1 MASSLDSFLSKCTTLSLPHTKQLHAHLFTTGQFQLPISPARSKLLELYALSLGNLSFAILTFSQIRTPSTNDWNAIIRGFIQSPNPTNAFAWYKSMISKS RKVDALTCSFVLKACARVLARLESIQIHTHIVRKGFIADALLGTTLLDVYAKVGEIDSAEKVFDEMVKRDIASWNALISGFAQGSKPTEALSLFKRMEID GFKPNEISVLGALSACAQLGDFKEGEKIHGYIKVERFDMNAQVCNVVIDMYAKCGFVDKAYSVFESMSCRKDIVTWNTMIMAFAMHGEGCKALELFEKMD QSGVSPDDVSYLAVLCACNHGGLVEEGFRLFNSMENCGVKPNVKHYGSVVDLLGRAGRLHEAYDIVNSMPTVPDIVLWQTLLGASRTHRNVEIAETVSRK LVEMGSNHCGDFVLLSNVYAARERWADVGRVREAMKNRDVKKVPGLSYIEGNGVIHKFYNADKSHESWREIYAKLDEIRFRVKEYGYVAETSFVLHDIGE EDKENVLGHHSEKLAVAFGLISTSEGTPIQVIKNLRICGDCHFVIKLISKIYDREIIVRDRVRFHRFKEGFCSCRDYW

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G34160			Tetratricopeptide repeat (TPR)...		Potri.005G199800 [exp]	0	1
AT1G07740			Tetratricopeptide repeat (TPR)...		Potri.001G020501 [exp]	1.00	0.9295
AT3G22690			unknown protein		Potri.010G083700 [exp]	1.41	0.9243
AT4G39470			Tetratricopeptide repeat (TPR)...		Potri.005G085700 [exp]	3.87	0.8838
AT5G21970			Ubiquitin carboxyl-terminal hy...		Potri.006G218100 [exp]	4.47	0.9121
AT5G61190	C2H2ZnF		putative endonuclease or glyco...		Potri.017G091700 [exp]	4.69	0.8691
AT5G52380			VASCULAR-RELATED NAC-DOMAIN 6 ...		Potri.012G141700 [exp]	6.92	0.8681
AT4G14050			Pentatricopeptide repeat (PPR)...		Potri.001G321700 [exp]	6.92	0.9211
AT1G01940			Cyclophilin-like peptidyl-prol...		Potri.014G071600 [exp]	8.12	0.8597
AT2G22410		SLO1	SLOW GROWTH 1 (.1)		Potri.001G019500 [exp]	8.94	0.9152
AT1G52640			Pentatricopeptide repeat (PPR)...		Potri.004G102700 [exp]	15.49	0.9062

Compare expression of checked genes

Potri.005G199800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.