Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G69640 314 / 9e-109 SBH1 sphingoid base hydroxylase 1 (.1) AT1G14290 310 / 5e-107 SBH2 sphingoid base hydroxylase 2 (.1) AT2G29390 59 / 1e-10 ATSMO2-2, SMO2-2, ATSMO2, SMO2-1 Arabidopsis thaliana sterol 4-alpha-methyl-oxidase 2-2, sterol 4-alpha-methyl-oxidase 2-2 (.1.2.3.4.5) AT1G07420 56 / 3e-09 SMO2-1, ATSMO1, ATSMO2-2, SMO2-2 Arabidopsis thaliana sterol 4-alpha-methyl oxidase 1, sterol 4-alpha-methyl-oxidase 2-1 (.1.2) AT3G02590 45 / 2e-05 Fatty acid hydroxylase superfamily protein (.1) AT5G57800 43 / 0.0002 CER3, FLP1, YRE, WAX2 FACELESS POLLEN 1, ECERIFERUM 3, Fatty acid hydroxylase superfamily (.1) AT4G12110 41 / 0.0005 ATSMO1-1, SMO1-1 sterol-4alpha-methyl oxidase 1-1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G061400 [exp] 412 / 3e-147 AT1G69640 311 / 1e-107 sphingoid base hydroxylase 1 (.1) Potri.005G199901 [exp] 243 / 1e-82 AT1G69640 207 / 2e-68 sphingoid base hydroxylase 1 (.1) Potri.001G245300 [exp] 61 / 1e-10 AT1G07420 476 / 2e-172 Arabidopsis thaliana sterol 4-alpha-methyl oxidase 1, sterol 4-alpha-methyl-oxidase 2-1 (.1.2) Potri.009G037400 [exp] 59 / 5e-10 AT1G07420 470 / 5e-170 Arabidopsis thaliana sterol 4-alpha-methyl oxidase 1, sterol 4-alpha-methyl-oxidase 2-1 (.1.2) Potri.017G116600 [exp] 49 / 2e-06 AT3G02580 455 / 1e-163 DWARF 7, BOULE 1, sterol 1 (.1) Potri.003G116000 [exp] 45 / 3e-05 AT4G12110 448 / 3e-160 sterol-4alpha-methyl oxidase 1-1 (.1) Potri.001G116500 [exp] 44 / 3e-05 AT4G12110 439 / 1e-156 sterol-4alpha-methyl oxidase 1-1 (.1) Potri.004G097500 [exp] 41 / 0.0005 AT3G02580 464 / 3e-167 DWARF 7, BOULE 1, sterol 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028725 [exp] 379 / 4e-134 AT1G14290 358 / 3e-126 sphingoid base hydroxylase 2 (.1) Lus10006062 [exp] 355 / 5e-125 AT1G14290 352 / 6e-124 sphingoid base hydroxylase 2 (.1) Lus10037183 [exp] 310 / 5e-107 AT1G69640 422 / 3e-151 sphingoid base hydroxylase 1 (.1) Lus10028717 [exp] 306 / 1e-105 AT1G14290 301 / 1e-103 sphingoid base hydroxylase 2 (.1) Lus10036744 [exp] 305 / 4e-105 AT1G14290 421 / 7e-151 sphingoid base hydroxylase 2 (.1) Lus10012832 [exp] 304 / 1e-104 AT1G14290 414 / 5e-148 sphingoid base hydroxylase 2 (.1) Lus10030481 [exp] 303 / 3e-104 AT1G14290 414 / 4e-148 sphingoid base hydroxylase 2 (.1) Lus10006058 [exp] 87 / 3e-20 AT1G14290 75 / 6e-16 sphingoid base hydroxylase 2 (.1) Lus10040739 [exp] 59 / 5e-10 AT2G29390 454 / 5e-164 Arabidopsis thaliana sterol 4-alpha-methyl-oxidase 2-2, sterol 4-alpha-methyl-oxidase 2-2 (.1.2.3.4.5) Lus10016492 [exp] 59 / 5e-10 AT1G07420 463 / 3e-167 Arabidopsis thaliana sterol 4-alpha-methyl oxidase 1, sterol 4-alpha-methyl-oxidase 2-1 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04116 [poplar] [flax] FA_hydroxylase Fatty acid hydroxylase superfamily
Representative CDS sequence Show only first row Show all	>Potri.005G200000.5 pacid=42804727 polypeptide=Potri.005G200000.5.p locus=Potri.005G200000 ID=Potri.005G200000.5.v4.1 annot-version=v4.1 ATGGTGTTTTGGGAAGGTTATGTGAGTGATGAAGTAATGGGGATTTTTGCCCCTATTGTAATTTATTGGTTGTACGCGGGGTTTTACCAGCTATTGCCAC CGTTGGATGAATATAGATTGCACACTAGAAAAGAGGAGGAAGAGAAGAATTTGGTTCCGCTGTCGAAGGTGATTAAGGGTGTGTTGCTTCAACAACTAGT CCAGGCTGTTGTTGCTCATGCGCTCTTTTTGTTGACTTCATCAGCTGATGAATCTGGAACCACAATCCAGCCCTCTATCCCTATCCAAATCGTGCAAATC ATTATTGGAATGATTGTCATGGACACATGGCAGTACTTTGCGCACCGTTACATGCATCAGAACAAATTCTTATACCGCCATATCCACTCCCAGCATCACA GGCTAGTTGTAACTTATGCAATTGGGGCCCTTTATAATCACCCTCTCGAGGGTCTCTTGCTTGACACAGTGGGTGGTGCCATTGCATTCCTCGTCTCAGG AATGACTGCACGGACATCAGTCATTTTCTTCTGCTTTGCTGTAGTTAAAACAGTTGATGATCATTGTGGACTCTGGTTGCCTGGCAATATCTTCCATATC TTTTTCCAGAACAACACTGCTTATCATGACATCCACCATCAACTCCCAGGCACAAAGTACAATTATTCCCAGCCATTCTTCTCCATATGGGATAAACTTC TAGGGACTTACATGCCATACACTCTTGTAAACCGACCTGAAGGCGGTTTGGAGGCAAGACTGGTTAAGGACTAG
AA sequence Show only first row Show all	>Potri.005G200000.5 pacid=42804727 polypeptide=Potri.005G200000.5.p locus=Potri.005G200000 ID=Potri.005G200000.5.v4.1 annot-version=v4.1 MVFWEGYVSDEVMGIFAPIVIYWLYAGFYQLLPPLDEYRLHTRKEEEEKNLVPLSKVIKGVLLQQLVQAVVAHALFLLTSSADESGTTIQPSIPIQIVQI IIGMIVMDTWQYFAHRYMHQNKFLYRHIHSQHHRLVVTYAIGALYNHPLEGLLLDTVGGAIAFLVSGMTARTSVIFFCFAVVKTVDDHCGLWLPGNIFHI FFQNNTAYHDIHHQLPGTKYNYSQPFFSIWDKLLGTYMPYTLVNRPEGGLEARLVKD

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G69640		SBH1	sphingoid base hydroxylase 1 (...		Potri.005G200000 [exp]	0	1
AT5G67490			unknown protein		Potri.015G017700 [exp]	2.44	0.8247
AT5G15470		GAUT14	galacturonosyltransferase 14 (...		Potri.017G090800 [exp]	10.44	0.7283
AT5G15640			Mitochondrial substrate carrie...		Potri.017G098500 [exp]	16.27	0.7738
AT3G61260			Remorin family protein (.1)		Potri.002G157700 [exp]	16.70	0.7426
AT3G52740			unknown protein		Potri.004G203000 [exp]	17.20	0.8319
AT1G03905		ABCI19	ATP-binding cassette I19, P-lo...		Potri.002G036300 [exp]	19.49	0.7415	POP.2
AT5G16760		AtITPK1	inositol \(1,3,4\) P3 5/6-kina...		Potri.001G140000 [exp]	21.35	0.7044
AT5G46230			Protein of unknown function, D...		Potri.004G064700 [exp]	23.23	0.7176
AT1G56600		ATGOLS2	galactinol synthase 2 (.1)		Potri.013G005900 [exp]	23.23	0.8294
AT4G17090		CT-BMY, BMY8, B...	BETA-AMYLASE 8, BETA-AMYLASE 3...		Potri.003G085500 [exp]	25.03	0.8305	Pt-BMY.2

Compare expression of checked genes

Potri.005G200000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.