Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G34190 446 / 3e-151 NAC ANAC017 NAC domain containing protein 17 (.1) AT1G34180 413 / 3e-138 NAC ANAC016 NAC domain containing protein 16 (.1.2) AT1G32870 224 / 3e-66 NAC ANAC13, ANAC013 Arabidopsis NAC domain containing protein 13, NAC domain protein 13 (.1.2) AT5G09330 204 / 6e-59 NAC VNI1, ANAC082 VND-interacting 1, NAC domain containing protein 82 (.1.2.3.4) AT1G65910 199 / 8e-56 NAC ANAC028 NAC domain containing protein 28 (.1) AT5G04410 194 / 2e-54 NAC NAC2, ANAC078 Arabidopsis NAC domain containing protein 78, NAC domain containing protein 2 (.1) AT5G64060 185 / 3e-53 NAC ANAC103 NAC domain containing protein 103 (.1) AT3G17730 178 / 9e-52 NAC ANAC057 NAC domain containing protein 57 (.1) AT3G10500 186 / 1e-51 NAC ANAC053 NAC domain containing protein 53 (.1) AT3G10490 175 / 9e-51 NAC ANAC051, ANAC052 Arabidopsis NAC domain containing protein 51, NAC domain containing protein 52 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G061300 [exp] 938 / 0 AT1G34190 432 / 3e-145 NAC domain containing protein 17 (.1) Potri.008G031800 [exp] 211 / 1e-60 AT5G04410 511 / 6e-177 Arabidopsis NAC domain containing protein 78, NAC domain containing protein 2 (.1) Potri.010G229900 [exp] 205 / 1e-58 AT5G04410 481 / 4e-165 Arabidopsis NAC domain containing protein 78, NAC domain containing protein 2 (.1) Potri.004G081000 [exp] 194 / 7e-54 AT1G65910 465 / 4e-156 NAC domain containing protein 28 (.1) Potri.017G139500 [exp] 192 / 3e-53 AT1G65910 461 / 1e-154 NAC domain containing protein 28 (.1) Potri.015G030200 [exp] 178 / 5e-52 AT3G17730 374 / 6e-133 NAC domain containing protein 57 (.1) Potri.001G144400 [exp] 181 / 2e-51 AT4G17980 318 / 2e-108 NAC domain containing protein 71 (.1) Potri.003G089800 [exp] 180 / 4e-51 AT4G17980 319 / 6e-109 NAC domain containing protein 71 (.1) Potri.005G058900 [exp] 179 / 3e-50 AT5G64060 256 / 3e-82 NAC domain containing protein 103 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028713 [exp] 518 / 5e-179 AT1G34190 392 / 2e-130 NAC domain containing protein 17 (.1) Lus10006054 [exp] 454 / 6e-154 AT1G34190 339 / 9e-110 NAC domain containing protein 17 (.1) Lus10042284 [exp] 184 / 3e-53 AT3G17730 348 / 1e-121 NAC domain containing protein 57 (.1) Lus10026373 [exp] 183 / 4e-53 AT3G17730 348 / 2e-121 NAC domain containing protein 57 (.1) Lus10028824 [exp] 187 / 7e-52 AT5G04410 378 / 5e-125 Arabidopsis NAC domain containing protein 78, NAC domain containing protein 2 (.1) Lus10007377 [exp] 187 / 2e-51 AT1G65910 431 / 7e-143 NAC domain containing protein 28 (.1) Lus10023537 [exp] 182 / 2e-51 AT3G10490 331 / 2e-110 Arabidopsis NAC domain containing protein 51, NAC domain containing protein 52 (.1.2) Lus10020794 [exp] 189 / 6e-51 AT5G10360 449 / 8e-153 Ribosomal protein small subunit 6b, embryo defective 3010, Ribosomal protein S6e (.1.2) Lus10037939 [exp] 177 / 9e-50 AT3G10490 415 / 2e-143 Arabidopsis NAC domain containing protein 51, NAC domain containing protein 52 (.1.2) Lus10020896 [exp] 177 / 1e-49 AT5G09330 276 / 2e-88 VND-interacting 1, NAC domain containing protein 82 (.1.2.3.4)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02365 [poplar] [flax] NAM No apical meristem (NAM) protein
Representative CDS sequence Show only first row Show all	>Potri.005G200100.1 pacid=42802563 polypeptide=Potri.005G200100.1.p locus=Potri.005G200100 ID=Potri.005G200100.1.v4.1 annot-version=v4.1 ATGAAGGTCACCGCCGACTCTTGTCTCGGCGCTGATGAAACGGCGTGGCCGCCTGGGTTCAGGTTTCACCCGACAGACGAGGAGCTTGTGCTTTACTACT TGAAGAAGAAGATCTGTAAGAAAAGGATAAAACTCAATATTATTCGGGAACTTGATGTTTACAAGTGGGATCCTGAGGAGTTGCCTGGGCAATCGATATT GAAGACTGGGGATAGGCAATGGTTCTTCTTCAGTCCAAGGGATAGGAAGTATCCTAATGGAGCAAGGTCAAATAGGGCGACCAGACAGGGGTATTGGAAA GCAACAGGGAAGGACCGCATTGTTGTGTGCAATTCTCGGAATGTTGGAGTGAAGAAAACCCTAGTTTTCTACAGAGGCCGAGCGCCGAGTGGTCAACGAA CTGATTGGGTGATGCACGAGTATACTTTGGATGAAGAAGAACTTAATAGGTGCCCAAATGTGCAGGATTATTATGCGCTTTACAAGGTTTTCAAAAAAAG TGGACCTGGACCTAAGAATGGTGAACAGTATGGAGCACCATTTAAGGAAGAGGACTGGGCTGATGATGAAAATCCATGTGTCAATAGCTTGGTTACTCCA GAGATTCCTGTTGAGCAGCATAATGAAGTGTCTCTTGTTGATAATGTTAGAGTGTCAGCTCAACTTGAGCTGCCATTGAATGATTTTGAGGACATAATAA AACAAATAGCTGAAGAACCTGCTCTTAACCATCTACAGAACAATGATTTCACTTATCCACTGCCCCAGGTTGCTAGTGAAGAAGAGGCACAAAGTACTTT AGTTGATCCATCTTTCAGGGAAGTTGTTTCTGAACCAGCTGGAGAGTTGACGACAAGTGGTCAGCACTACAATAAACACACCAGCTTAAACTTTAACCAG TCAGCTACCTCAACATTGCAATTGCACGAGGCATCTGAGGTCACATCTGCTCCCCAGTTAAATGAAGAGGATTTCCTGGAAATTGATGATCTCATTGGTC CAGAGCCTTCTTTCTACAACACTGAGCAACCTGCCGAAAACTTGCAGTTTGATGGATTGAGTGAGTTTGACCTGTACCACGATGCAGCCATGTTTTTGTG GGACATTGGGCCTGTTGATCAGGAAGCAGTTTCATGTTCATACGTGAGTTCCTATGGGTGTGATATGGTTAACCAAGCAAGCTACCGGCTGCAGCCCAAT TCAATAACAAACCCGGTGGATTATCAGTTGCAGCCAAATTTGGTGGCCAACCAGGTGGATTATGAGCTGCATCCACAATTTTTTGATGCGGAGCAGATGA ACAATCAGCTGTGGGTGCATGATCATCAAAATAATGCATTAGCTACTTCAGAATCACATCATGGGATTCTTTTCCAATCAACAGGTGCTGTGTGCGAATC GAGCGATAATTCTACTGGAGCCAATGGAAATCAAGGGAGCAAAGAGGGTGATGCTGCTAATGGTTGGTTATCTTCTGCCTTGTGGGGTTTTGTTGAGTCC ATCCCTACTACGCCTGCGTCAGCCTCAGAGAACCCTTTGGTTAATAAGGCTTTTGAGCGAATGTCAAGCTTCAGCAGGATTAGAATGAATGTCAAAAACA TCAATGTTGATGCAGGTAATGGTGCTGCAAGTGCAAGGAGCACTGGTGGAAATAAGGGATTTGTTTTATTGTCAATTATTGGAGTCTTGTGTGCCATCTT GTGGGTATTAGTCGGAGGTGCCAAAGTGCTGGGGAGATCAATCTCCTCGTGA
AA sequence Show only first row Show all	>Potri.005G200100.1 pacid=42802563 polypeptide=Potri.005G200100.1.p locus=Potri.005G200100 ID=Potri.005G200100.1.v4.1 annot-version=v4.1 MKVTADSCLGADETAWPPGFRFHPTDEELVLYYLKKKICKKRIKLNIIRELDVYKWDPEELPGQSILKTGDRQWFFFSPRDRKYPNGARSNRATRQGYWK ATGKDRIVVCNSRNVGVKKTLVFYRGRAPSGQRTDWVMHEYTLDEEELNRCPNVQDYYALYKVFKKSGPGPKNGEQYGAPFKEEDWADDENPCVNSLVTP EIPVEQHNEVSLVDNVRVSAQLELPLNDFEDIIKQIAEEPALNHLQNNDFTYPLPQVASEEEAQSTLVDPSFREVVSEPAGELTTSGQHYNKHTSLNFNQ SATSTLQLHEASEVTSAPQLNEEDFLEIDDLIGPEPSFYNTEQPAENLQFDGLSEFDLYHDAAMFLWDIGPVDQEAVSCSYVSSYGCDMVNQASYRLQPN SITNPVDYQLQPNLVANQVDYELHPQFFDAEQMNNQLWVHDHQNNALATSESHHGILFQSTGAVCESSDNSTGANGNQGSKEGDAANGWLSSALWGFVES IPTTPASASENPLVNKAFERMSSFSRIRMNVKNINVDAGNGAASARSTGGNKGFVLLSIIGVLCAILWVLVGGAKVLGRSISS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G34190	NAC	ANAC017	NAC domain containing protein ...		Potri.005G200100 [exp]	0	1
AT4G28400			Protein phosphatase 2C family ...		Potri.018G150800 [exp]	2.00	0.9289
AT2G46080			unknown protein		Potri.008G085600 [exp]	2.44	0.9213
AT1G24140			Matrixin family protein (.1)		Potri.015G103900 [exp]	2.64	0.9295
AT3G48990			AMP-dependent synthetase and l...		Potri.001G105900 [exp]	2.64	0.9054
AT1G34190	NAC	ANAC017	NAC domain containing protein ...		Potri.002G061300 [exp]	3.16	0.8946
AT5G07610			F-box family protein (.1)		Potri.007G027200 [exp]	5.65	0.9008
AT1G67970	HSF	AT-HSFA8	heat shock transcription facto...		Potri.010G104300 [exp]	5.83	0.8839	Pt-HSF5.1
AT1G34420			leucine-rich repeat transmembr...		Potri.013G114200 [exp]	6.48	0.9083
AT1G34370	C2H2ZnF	STOP1	sensitive to proton rhizotoxic...		Potri.007G094100 [exp]	6.70	0.9084
AT2G38470	WRKY	ATWRKY33, WRKY3...	WRKY DNA-binding protein 33 (....		Potri.013G153400 [exp]	6.92	0.9204

Compare expression of checked genes

Potri.005G200100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.