Plant FIBer expression Database

Potri.005G200200 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT4G09670 521 / 0 Oxidoreductase family protein (.1)
AT1G34200 416 / 6e-146 Glyceraldehyde-3-phosphate dehydrogenase-like family protein (.1)
AT1G66130 288 / 2e-95 NAD(P)-binding Rossmann-fold superfamily protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.005G200300
[exp]
698 / 0 AT4G09670 522 / 0.0 Oxidoreductase family protein (.1)
Potri.017G137300
[exp]
373 / 1e-128 AT1G66130 382 / 2e-132 NAD(P)-binding Rossmann-fold superfamily protein (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10001327
[exp]
515 / 0 AT4G09670 484 / 1e-172 Oxidoreductase family protein (.1)
Lus10013633
[exp]
515 / 0 AT4G09670 486 / 4e-173 Oxidoreductase family protein (.1)
Lus10005674
[exp]
437 / 9e-154 AT4G09670 437 / 9e-154 Oxidoreductase family protein (.1)
Lus10002180
[exp]
234 / 2e-75 AT1G66130 239 / 3e-77 NAD(P)-binding Rossmann-fold superfamily protein (.1)
Lus10039898
[exp]
186 / 3e-57 AT1G66130 212 / 1e-67 NAD(P)-binding Rossmann-fold superfamily protein (.1)
Lus10020317
[exp]
0 / 1 AT4G09670 69 / 2e-24 Oxidoreductase family protein (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0063 NADP_Rossmann PF01408 GFO_IDH_MocA Oxidoreductase family, NAD-binding Rossmann fold
Representative CDS sequence
>Potri.005G200200.1 pacid=42805586 polypeptide=Potri.005G200200.1.p locus=Potri.005G200200 ID=Potri.005G200200.1.v4.1 annot-version=v4.1
ATGGCCGAAAAACCAATCCGGTTTGGAATAATCGGGTGCGCAGATATTGCCCGAAAATTGTCTCGCGCAATTACTTTAGCACCCAACGCTGAACTCTCTG
CTGTCGCTAGCCGCTCCTTGGATAAAGCCTCCGCTTTTGCCAAAGCCAACAACTTTCCACCCAGCGCCAAGATTTATGGCTCTTATGAGGACCTCCTCGA
CGACCCAGAAATCGATGCCGTCTATGTCCCTTTGCCCACCAGCCTTCACGTCAAATGGGCATGCTTGGTTGCCCAGAAGAAGAAGCATATCTTGTTGGAG
AAGCCTGTTGGGCTTAATGTTACAGAGCTTGATAAAATCGTGGAGGCTTGTGAGGCAAACGGAGTGCAAATTATGGATGGAACCATGTGGATACATAATC
CTAGAACTCATAAGATGAAAGAGTTCTTGAACGATAAGGAGCGGTTTGGAGAGCTAAAAAATATGCACAGCTGCTTTACATTTGCTGGTGATGAGGATTT
TCTCAAAAATGACATTCGTGTGAAGTCAGATCTTGATGCTCTCGGTGCTCTCGGTGATGCGGGCTGGTATGGCATCAGGTCAATTCTCTGGGCCGTTGAC
TATGAACTGCCGAAAACTGTAACAGCGTTGCCTGGGCCTGTTTTAAATGAAGCAGGGGTTATTTTGTCTTGTGGTGCTGCTCTGCATTGGGAAGATGGGA
AAGTGGCAACTTTCCATTGCTCTTTTTTGGCTCATTTGACAATGGATATTACTGCTATTGGAACAGCGGGGACTTTGCATCTCAATGATTTCATAATTCC
TTTTGGAGAGAAGGAAGCGTCGTTCACAACAGTTTCAAAATCTGGGTTCACAGATCTTGTGACAGGTTGGGTGCCTCTGCCAAGCCAGCACACTGTAACC
ACAGATCTCCCCCAGGAAGCTTGCATGGTGACAGAATTTGCCCGCTTGGTTGGAAATATTAAAGCAAATGGCGCAAAACCCGATCCAAAGTGGCCGAGTA
TAAGCAGGAAGACACAGCTTATACTGGATGCAGTCACGACGTCAATTGCCCAAGGTTCAAAGCCTGTTGAGATTTAA
AA sequence
>Potri.005G200200.1 pacid=42805586 polypeptide=Potri.005G200200.1.p locus=Potri.005G200200 ID=Potri.005G200200.1.v4.1 annot-version=v4.1
MAEKPIRFGIIGCADIARKLSRAITLAPNAELSAVASRSLDKASAFAKANNFPPSAKIYGSYEDLLDDPEIDAVYVPLPTSLHVKWACLVAQKKKHILLE
KPVGLNVTELDKIVEACEANGVQIMDGTMWIHNPRTHKMKEFLNDKERFGELKNMHSCFTFAGDEDFLKNDIRVKSDLDALGALGDAGWYGIRSILWAVD
YELPKTVTALPGPVLNEAGVILSCGAALHWEDGKVATFHCSFLAHLTMDITAIGTAGTLHLNDFIIPFGEKEASFTTVSKSGFTDLVTGWVPLPSQHTVT
TDLPQEACMVTEFARLVGNIKANGAKPDPKWPSISRKTQLILDAVTTSIAQGSKPVEI

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT4G09670 Oxidoreductase family protein ... Potri.005G200200
[exp]
0 1
AT5G09570 Cox19-like CHCH family protein... Potri.009G078100
[exp]
6.70 0.7756
AT3G10620 ATNUDX26 nudix hydrolase homolog 26 (.1... Potri.010G242100
[exp]
9.38 0.7967
AT4G11120 translation elongation factor ... Potri.014G172300
[exp]
16.88 0.7612
AT1G16080 unknown protein Potri.003G185901
[exp]
21.30 0.8237
AT5G40810 Cytochrome C1 family (.1.2) Potri.004G203800
[exp]
24.39 0.7510
AT1G21780 BTB/POZ domain-containing prot... Potri.002G082800
[exp]
32.18 0.7043
AT2G35010 ATO1 thioredoxin O1 (.1.2) Potri.001G159000
[exp]
51.27 0.7745
AT4G14880 OLD3, CYTACS1, ... ONSET OF LEAF DEATH 3, O-acety... Potri.013G035500
[exp]
52.76 0.6833
AT4G01470 ATTIP1.3, GAMMA... tonoplast intrinsic protein 1;... Potri.010G209900
[exp]
55.09 0.6762 TIP1.2
AT1G17100 SOUL heme-binding family prote... Potri.001G067100
[exp]
55.45 0.7453

Potri.005G200200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.