Plant FIBer expression Database

Potri.005G200300 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT4G09670 522 / 0 Oxidoreductase family protein (.1)
AT1G34200 411 / 8e-144 Glyceraldehyde-3-phosphate dehydrogenase-like family protein (.1)
AT1G66130 287 / 7e-95 NAD(P)-binding Rossmann-fold superfamily protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.005G200200
[exp]
699 / 0 AT4G09670 521 / 0.0 Oxidoreductase family protein (.1)
Potri.017G137300
[exp]
371 / 5e-128 AT1G66130 382 / 2e-132 NAD(P)-binding Rossmann-fold superfamily protein (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10001327
[exp]
512 / 0 AT4G09670 484 / 1e-172 Oxidoreductase family protein (.1)
Lus10013633
[exp]
511 / 0 AT4G09670 486 / 4e-173 Oxidoreductase family protein (.1)
Lus10005674
[exp]
435 / 4e-153 AT4G09670 437 / 9e-154 Oxidoreductase family protein (.1)
Lus10002180
[exp]
235 / 1e-75 AT1G66130 239 / 3e-77 NAD(P)-binding Rossmann-fold superfamily protein (.1)
Lus10039898
[exp]
184 / 1e-56 AT1G66130 212 / 1e-67 NAD(P)-binding Rossmann-fold superfamily protein (.1)
Lus10020317
[exp]
0 / 1 AT4G09670 69 / 2e-24 Oxidoreductase family protein (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0063 NADP_Rossmann PF01408 GFO_IDH_MocA Oxidoreductase family, NAD-binding Rossmann fold
Representative CDS sequence
>Potri.005G200300.1 pacid=42802510 polypeptide=Potri.005G200300.1.p locus=Potri.005G200300 ID=Potri.005G200300.1.v4.1 annot-version=v4.1
ATGGCCGAAAAACCAATCCGCTTTGGAATAATCGGGTGCGCAGATATTGCCCGAAAATTGTCTCGCGCAATTACTTTAGCACCCAACGCTGAACTCTCTG
CTGTCGCTAGCCGCTCCTTGGATAAAGCCTCCGCTTTTGCCAAAGCCAACAACTTTCCACCCAGCGCCAAGATTTATGGCTCTTATGAGGACCTCCTCGA
CGACCCAGAAATCGATGCCGTCTATGTCCCTTTGCCCACCAGCCTTCACGTCAAATGGGCATGCTTGGTTGCCCAGAAGAAGAAGCATATCTTGTTGGAG
AAGCCTGTTGGGCTTAATGTTACGGAGCTTGATAAAATCGTGGAGGCTTGTGAGGCAAACGGAGTGCAAATTATGGATGGAACCATGTGGATACATAATC
CTAGAACTCATAAGATGAAAGAGTTCTTGAACGATAAGGAGCGGTTTGGAGAGCTAAAAAATATGCACAGCTGCTTTACATATGCTGGCGATGAGGATTT
TCTCAGCAATGACATTCGTGTGAGTTCAGATCTTGATGCTCTCGGTGCTCTCGGTGATGCGGGCTGGTATGGCATCAGGTCAATTCTCTGGGCCGTTGAC
TATGAACTGCCGAAAACTGTAACAGCGTTGCCTGGGACTGTTTTAAATGAAGCAGGGGTTATTTTGTCTTGTGGTGCTTCTCTGCATTGGGAAGATGGGA
AAGTGGCAACTTTCCATTGCTCTTTTTTGGCTCATTTGACAATGGATATTACTGCTATTGGAACAGCGGGGACTTTGCATCTCAATGATTTCATAATTCC
TTTTGGAGAGAAGGAAGCGTCGTTCACAACAGTTTCAAAATCTTGGTTCACAGATCTTGTGACAGGTTGGGTGCCTCTGCCAAGCCAGCACACTGTAACC
ACAGATCTCCCCCAGGAAGCTTGCATGGTGACAGAATTTGCCCGCTTGGTTGGAAATATTAAAGCAAATGGCGCAAAACCCGATCCAAAGTGGCCGAGTA
TAAGCAGGAAGACACAGCTTATACTGGATGCAGTCACGACGTCAATTGCCCAAGGTTCAAAGCCTGTTGAGATTTAA
AA sequence
>Potri.005G200300.1 pacid=42802510 polypeptide=Potri.005G200300.1.p locus=Potri.005G200300 ID=Potri.005G200300.1.v4.1 annot-version=v4.1
MAEKPIRFGIIGCADIARKLSRAITLAPNAELSAVASRSLDKASAFAKANNFPPSAKIYGSYEDLLDDPEIDAVYVPLPTSLHVKWACLVAQKKKHILLE
KPVGLNVTELDKIVEACEANGVQIMDGTMWIHNPRTHKMKEFLNDKERFGELKNMHSCFTYAGDEDFLSNDIRVSSDLDALGALGDAGWYGIRSILWAVD
YELPKTVTALPGTVLNEAGVILSCGASLHWEDGKVATFHCSFLAHLTMDITAIGTAGTLHLNDFIIPFGEKEASFTTVSKSWFTDLVTGWVPLPSQHTVT
TDLPQEACMVTEFARLVGNIKANGAKPDPKWPSISRKTQLILDAVTTSIAQGSKPVEI

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT4G09670 Oxidoreductase family protein ... Potri.005G200300
[exp]
0 1
AT3G09280 unknown protein Potri.006G092200
[exp]
9.38 0.6074
AT1G78610 MSL6 mechanosensitive channel of sm... Potri.001G384100
[exp]
9.53 0.6725
AT3G15260 Protein phosphatase 2C family ... Potri.011G116700
[exp]
13.41 0.6405
AT1G30760 FAD-binding Berberine family p... Potri.012G034700
[exp]
16.52 0.6457
AT2G01300 unknown protein Potri.008G127800
[exp]
16.73 0.6104
AT3G05980 unknown protein Potri.010G090700
[exp]
20.09 0.6518
AT5G53750 CBS domain-containing protein ... Potri.001G402900
[exp]
20.49 0.5876
AT1G59640 bHLH ZCW32, bHLH031... BIG PETAL UB, BIG PETAL P (.1.... Potri.008G190800
[exp]
27.00 0.5771
AT1G71450 AP2_ERF Integrase-type DNA-binding sup... Potri.013G101100
[exp]
53.66 0.5888
Potri.017G084700
[exp]
66.79 0.5646

Potri.005G200300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.