Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G09970 681 / 0 CYP78A7 "cytochrome P450, family 78, subfamily A, polypeptide 7", cytochrome P450, family 78, subfamily A, polypeptide 7 (.1) AT2G46660 487 / 3e-168 CYP78A6 "cytochrome P450, family 78, subfamily A, polypeptide 6", cytochrome P450, family 78, subfamily A, polypeptide 6 (.1) AT3G61880 479 / 3e-165 CYP78A9 cytochrome p450 78a9 (.1.2) AT1G01190 466 / 4e-160 CYP78A8 "cytochrome P450, family 78, subfamily A, polypeptide 8", cytochrome P450, family 78, subfamily A, polypeptide 8 (.1) AT1G13710 456 / 2e-156 CYP78A5, KLUH KLUH, "cytochrome P450, family 78, subfamily A, polypeptide 5", cytochrome P450, family 78, subfamily A, polypeptide 5 (.1) AT1G74110 452 / 1e-154 CYP78A10 "cytochrome P450, family 78, subfamily A, polypeptide 10", cytochrome P450, family 78, subfamily A, polypeptide 10 (.1) AT2G40890 262 / 4e-81 REF8, CYP98A3, C3H1 cytochrome P450, family 98, subfamily A, polypeptide 3 (.1) AT1G01280 235 / 9e-71 CYP703A2 "cytochrome P450, family 703, subfamily A, polypeptide 2", cytochrome P450, family 703, subfamily A, polypeptide 2 (.1) AT5G07990 235 / 1e-70 CYP75B1, D501, TT7 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1) AT2G45570 228 / 4e-68 CYP76C2 "cytochrome P450, family 76, subfamily C, polypeptide 2", cytochrome P450, family 76, subfamily C, polypeptide 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G060900 [exp] 933 / 0 AT5G09970 703 / 0.0 "cytochrome P450, family 78, subfamily A, polypeptide 7", cytochrome P450, family 78, subfamily A, polypeptide 7 (.1) Potri.005G084500 [exp] 729 / 0 AT5G09970 759 / 0.0 "cytochrome P450, family 78, subfamily A, polypeptide 7", cytochrome P450, family 78, subfamily A, polypeptide 7 (.1) Potri.007G081200 [exp] 725 / 0 AT5G09970 743 / 0.0 "cytochrome P450, family 78, subfamily A, polypeptide 7", cytochrome P450, family 78, subfamily A, polypeptide 7 (.1) Potri.014G102700 [exp] 482 / 3e-166 AT2G46660 723 / 0.0 "cytochrome P450, family 78, subfamily A, polypeptide 6", cytochrome P450, family 78, subfamily A, polypeptide 6 (.1) Potri.001G083900 [exp] 473 / 1e-162 AT2G46660 692 / 0.0 "cytochrome P450, family 78, subfamily A, polypeptide 6", cytochrome P450, family 78, subfamily A, polypeptide 6 (.1) Potri.002G175200 [exp] 465 / 1e-159 AT2G46660 694 / 0.0 "cytochrome P450, family 78, subfamily A, polypeptide 6", cytochrome P450, family 78, subfamily A, polypeptide 6 (.1) Potri.003G173500 [exp] 459 / 2e-157 AT1G74110 491 / 3e-170 "cytochrome P450, family 78, subfamily A, polypeptide 10", cytochrome P450, family 78, subfamily A, polypeptide 10 (.1) Potri.001G054800 [exp] 459 / 5e-157 AT1G74110 502 / 8e-174 "cytochrome P450, family 78, subfamily A, polypeptide 10", cytochrome P450, family 78, subfamily A, polypeptide 10 (.1) Potri.003G146800 [exp] 456 / 3e-156 AT2G46660 659 / 0.0 "cytochrome P450, family 78, subfamily A, polypeptide 6", cytochrome P450, family 78, subfamily A, polypeptide 6 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036627 [exp] 702 / 0 AT5G09970 735 / 0.0 "cytochrome P450, family 78, subfamily A, polypeptide 7", cytochrome P450, family 78, subfamily A, polypeptide 7 (.1) Lus10035844 [exp] 692 / 0 AT5G09970 729 / 0.0 "cytochrome P450, family 78, subfamily A, polypeptide 7", cytochrome P450, family 78, subfamily A, polypeptide 7 (.1) Lus10005780 [exp] 648 / 0 AT5G09970 696 / 0.0 "cytochrome P450, family 78, subfamily A, polypeptide 7", cytochrome P450, family 78, subfamily A, polypeptide 7 (.1) Lus10005995 [exp] 474 / 3e-163 AT2G46660 708 / 0.0 "cytochrome P450, family 78, subfamily A, polypeptide 6", cytochrome P450, family 78, subfamily A, polypeptide 6 (.1) Lus10030216 [exp] 458 / 7e-157 AT2G46660 697 / 0.0 "cytochrome P450, family 78, subfamily A, polypeptide 6", cytochrome P450, family 78, subfamily A, polypeptide 6 (.1) Lus10017334 [exp] 452 / 2e-154 AT3G61880 656 / 0.0 cytochrome p450 78a9 (.1.2) Lus10015788 [exp] 427 / 3e-146 AT1G13710 471 / 1e-163 KLUH, "cytochrome P450, family 78, subfamily A, polypeptide 5", cytochrome P450, family 78, subfamily A, polypeptide 5 (.1) Lus10001670 [exp] 385 / 2e-128 AT2G46660 588 / 0.0 "cytochrome P450, family 78, subfamily A, polypeptide 6", cytochrome P450, family 78, subfamily A, polypeptide 6 (.1) Lus10020847 [exp] 252 / 3e-77 AT2G40890 859 / 0.0 cytochrome P450, family 98, subfamily A, polypeptide 3 (.1) Lus10033524 [exp] 251 / 5e-77 AT2G40890 866 / 0.0 cytochrome P450, family 98, subfamily A, polypeptide 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00067 [poplar] [flax] p450 Cytochrome P450
Representative CDS sequence Show only first row Show all	>Potri.005G200400.1 pacid=42805488 polypeptide=Potri.005G200400.1.p locus=Potri.005G200400 ID=Potri.005G200400.1.v4.1 annot-version=v4.1 ATGGATTTGTTTCCAACTCCTGTCGACTCAAGCTGGTGGATGTTTGCACTCCCTGCTATGTTACAAATCCAAAAATTGTCAAACCCTCTAATCTTGCTCT TTGTCTTAGCATCATTCTTGGTCATTACCGTGCTAAATTGGGCTTTCTCAACTGGTGGCCTAGCCTGGAAAAATGGCAGAAACCAAAAGGGTAATGTCCC AATCCCAGGTCCACGAGGCCTGCCCTTATTTGGAAGCTTATTCAGCTTAAGCCGCGGCTTGGCCCATCGCACCCTCGCTTGCATGGCGTCAAGCCAAGCC GCAACTCAGCTCATGGCTTTTAGCTTAGGTTCCACTCCTGCCATTGTAACCTCCGACCCTCAAATCGCTCGTGAAATCTTGACATCTCCTCACTTCGCTG ACCGTCCCATCAAGCTATCGGCTAAAAGCATCATGTTTAGCCGAGCCATTGGTTTTGCACCAAACGGGGCTTATTGGCGCCTCCTTAGAAGAATTGCATC AAATCATTTATTTGCACCGAGGCGCATCGCTGCTTATGAGCCATGGCGCCAGCTTGATTGTGCTAATATGTTGAGTGGCATTTATAATGAGCAATCCCTC CGTGGAATTGTTTGTTTGCGTAAACATCTTCAAAATGCTTCTATTAATAACATTATGGGTACTGTTTTTGGAAAAAGATATGACTTAATGCACAATAATG AGGAGGCAAAAGAATTGCAAGAACTTGTTAGAGAAGGTTTTGAGCTCTTGGGCGCTTTTAACTGGTCTGATTATCTCCCGTGGCTGAACTACTTTTATGA CCCTTCTCGCATCAAACAACGTTGTTGTCTTCTTGTTCCTCGAGTCAAGAAACTCGTTAAGAAAATCATTGACGAGCATAGAATTATGAAGCCTAAAAAT GAATTTCAAAACGCTGATTTCGTCCATGTTTTGCTTTCTTTGGAGGGTGAAGAGAAACTTGACGAGGATGACATGGTTGCTGTTTTATGGGAGATGATCT TTCGTGGCACCGATACCACTGCTCTTTTGACTGAGTGGATCATGGCAGAGTTGGTTTTGAACCCTGAGATTCAAGCCAAGCTGCGGAACGAGCTGAACTT TATCGTTGGAAACAGGAGTGTCAAGGATGCTGACGTAGCTAAATTGCCATACCTACAGGCTGTGATCAAGGAAACCTTACGAGTACACCCTCCCGGGCCC CTCCTCTCATGGGCTCGGTTGTCCACATCAGACGTCCACCTCAGTAATGGCATGGTGGTCCCCACCAACACCACCGCAATGGTCAATATGTGGGCCATAA CCCATGACCCCAGAGTATGGGAGGATGCCTTGGTGTTTAAGCCTGAGAGGTTCTTGGAGAGGCAAGGTGGTGCTGATGTGGATGTAAGAGGAGGTGACCT CAGACTTGCACCATTTGGAGCTGGACGTAGGGTTTGTCCTGGTAAGAACATAGGACTTGTGACAGTGAGCCTATGGGTGGCTAAGTTGGTGCACCATTTT GAGTGGGTCCAGGACACGCATAACCCAGTTGACCTAAGCGAAGTGCTGAGACTTTCTTGTGAAATGAAGAAGCCTCTCTCTGCTGTGGCTATTCCAAAAG AATGA
AA sequence Show only first row Show all	>Potri.005G200400.1 pacid=42805488 polypeptide=Potri.005G200400.1.p locus=Potri.005G200400 ID=Potri.005G200400.1.v4.1 annot-version=v4.1 MDLFPTPVDSSWWMFALPAMLQIQKLSNPLILLFVLASFLVITVLNWAFSTGGLAWKNGRNQKGNVPIPGPRGLPLFGSLFSLSRGLAHRTLACMASSQA ATQLMAFSLGSTPAIVTSDPQIAREILTSPHFADRPIKLSAKSIMFSRAIGFAPNGAYWRLLRRIASNHLFAPRRIAAYEPWRQLDCANMLSGIYNEQSL RGIVCLRKHLQNASINNIMGTVFGKRYDLMHNNEEAKELQELVREGFELLGAFNWSDYLPWLNYFYDPSRIKQRCCLLVPRVKKLVKKIIDEHRIMKPKN EFQNADFVHVLLSLEGEEKLDEDDMVAVLWEMIFRGTDTTALLTEWIMAELVLNPEIQAKLRNELNFIVGNRSVKDADVAKLPYLQAVIKETLRVHPPGP LLSWARLSTSDVHLSNGMVVPTNTTAMVNMWAITHDPRVWEDALVFKPERFLERQGGADVDVRGGDLRLAPFGAGRRVCPGKNIGLVTVSLWVAKLVHHF EWVQDTHNPVDLSEVLRLSCEMKKPLSAVAIPKE

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G09970		CYP78A7	"cytochrome P450, family 78, s...		Potri.005G200400 [exp]	0	1
					Potri.010G147200 [exp]	5.83	0.8411
					Potri.006G120650 [exp]	7.21	0.8064
AT4G27220			NB-ARC domain-containing disea...		Potri.005G061860 [exp]	11.22	0.7844
AT4G00230		XSP1	xylem serine peptidase 1 (.1)		Potri.014G074500 [exp]	15.49	0.7831
AT5G47320		RPS19	ribosomal protein S19 (.1)		Potri.019G101950 [exp]	18.86	0.6549
AT5G51950			Glucose-methanol-choline (GMC)...		Potri.012G135200 [exp]	19.59	0.6971
AT2G29970			Double Clp-N motif-containing ...		Potri.008G069100 [exp]	19.89	0.7712
AT5G65170			VQ motif-containing protein (....		Potri.007G091600 [exp]	20.71	0.7801
AT1G73050			Glucose-methanol-choline (GMC)...		Potri.010G249501 [exp]	22.24	0.7004
AT4G35280	C2H2ZnF	DAZ2	DUO1-ACTIVATED ZINC FINGER 2, ...		Potri.004G205300 [exp]	23.40	0.6290

Compare expression of checked genes

Potri.005G200400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.