Plant FIBer expression Database

Potri.005G200900 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G42840 163 / 3e-48 PDF1 protodermal factor 1 (.1)
AT2G16630 45 / 5e-05 Pollen Ole e 1 allergen and extensin family protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.002G060800
[exp]
222 / 1e-71 AT2G42840 167 / 4e-50 protodermal factor 1 (.1)
Potri.005G224600
[exp]
53 / 1e-08 AT2G20515 177 / 8e-58 unknown protein
Potri.002G038200
[exp]
50 / 2e-07 AT2G20515 189 / 2e-62 unknown protein
Potri.004G169200
[exp]
43 / 0.0002 AT2G16630 186 / 1e-55 Pollen Ole e 1 allergen and extensin family protein (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10007351
[exp]
191 / 7e-59 AT2G42840 170 / 5e-51 protodermal factor 1 (.1)
Lus10031390
[exp]
173 / 4e-52 AT2G42840 / protodermal factor 1 (.1)
Lus10010941
[exp]
172 / 1e-51 AT2G42840 169 / 2e-50 protodermal factor 1 (.1)
Lus10007352
[exp]
164 / 3e-51 AT2G42840 132 / 3e-39 protodermal factor 1 (.1)
Lus10022928
[exp]
45 / 1e-05 AT2G20515 173 / 3e-56 unknown protein
Lus10026279
[exp]
46 / 2e-05 AT2G16630 300 / 2e-100 Pollen Ole e 1 allergen and extensin family protein (.1)
Lus10042394
[exp]
44 / 9e-05 AT2G16630 281 / 4e-93 Pollen Ole e 1 allergen and extensin family protein (.1)
Lus10024890
[exp]
42 / 0.0001 AT2G20515 154 / 2e-48 unknown protein
PFAM info
Representative CDS sequence
>Potri.005G200900.2 pacid=42805667 polypeptide=Potri.005G200900.2.p locus=Potri.005G200900 ID=Potri.005G200900.2.v4.1 annot-version=v4.1
ATGGAGAAGCAGAAGAGCAATCAGGCTCCAATGTTGATGTGGGTTTTGGTCGCTGGCTTGCTTTCCCACAACTTGGCCTTCCCTGTCTTGGCCACAACCT
TTGAAGATCAAAAGAACTACTACTCCCCACCAGACCCGCATTCAAGAAGTCCCCCTTCTGGTTCACACACCCCTTCCCATGGAACTACACCTTCACATGG
CTCAGGAGGTAGCTCTGGTGGCACACCATCTCACTCAACCCCGTCAACCCCTTCAGGTGGAAGCCACAATCCAACACCATCAACCCCTTCAGGTGGAGGC
TACAATCCAACACCATCAACCCCTTCAGGTGGAGGCCACAACATTCCAACACCATCAACCCCTTCAGGTGGAAATTGTGGGACCCCACCAAGTGTTCCTA
CTCCATCAATACCATCAAACCCTCCTCGAGGTGGTACCTACCCCACCCCTCCGACCACTGGAGGCAGCCCCCCAACACCAGTCAGTGTAAGCCCACCAAC
CACCCCAAGTATCATTCCAGGCACCCCTTTCACCCCCACGCCTCCTTTCATTCCTGATCCTAATTCACCCTTCTCATGCAATTACTGGAGAACTCACCCT
GCGCTAATATGGGGTGTTTTGGGCTGGTGGGGAACAATGGGAAACGCATTTGGTGTTGGTAGCTTGCCAGGATTTGGAACGAGTATGACCGTGCAGCAAG
CACTTTCAAACACACGTACTGATGGGTACGGAACACTCTACCGAGAAGGTACTGCTTCCTTGCTCAACTCCATGGTAAGCAACAGGTTCCCTTTCACAAC
CAGGCAAGTCAGGGAGAATTTCATTTCTGCACTCGCCTCCAACAAGGCTGCAGGAGCCCAGGGACATCTCTTCAAGCTGGCCAATGAGGGCAGACTCAAG
CCTAGAGCCTGA
AA sequence
>Potri.005G200900.2 pacid=42805667 polypeptide=Potri.005G200900.2.p locus=Potri.005G200900 ID=Potri.005G200900.2.v4.1 annot-version=v4.1
MEKQKSNQAPMLMWVLVAGLLSHNLAFPVLATTFEDQKNYYSPPDPHSRSPPSGSHTPSHGTTPSHGSGGSSGGTPSHSTPSTPSGGSHNPTPSTPSGGG
YNPTPSTPSGGGHNIPTPSTPSGGNCGTPPSVPTPSIPSNPPRGGTYPTPPTTGGSPPTPVSVSPPTTPSIIPGTPFTPTPPFIPDPNSPFSCNYWRTHP
ALIWGVLGWWGTMGNAFGVGSLPGFGTSMTVQQALSNTRTDGYGTLYREGTASLLNSMVSNRFPFTTRQVRENFISALASNKAAGAQGHLFKLANEGRLK
PRA

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT2G42840 PDF1 protodermal factor 1 (.1) Potri.005G200900
[exp]
0 1
AT5G22430 Pollen Ole e 1 allergen and ex... Potri.009G019300
[exp]
1.00 0.9962
AT1G74670 GASA6 GA-stimulated Arabidopsis 6, G... Potri.001G254100
[exp]
3.16 0.9742
AT5G04820 OFP ATOFP13, OFP13 ARABIDOPSIS THALIANA OVATE FAM... Potri.016G072900
[exp]
3.74 0.9561
AT2G37630 MYB AtPHAN, AtMYB91... ARABIDOPSIS PHANTASTICA-LIKE 1... Potri.017G112300
[exp]
4.24 0.9676
AT1G78170 unknown protein Potri.005G165300
[exp]
5.65 0.9721
AT5G47500 PME5 pectin methylesterase 5, Pecti... Potri.003G076900
[exp]
6.00 0.9548
AT3G04290 ATLTL1, LTL1 Li-tolerant lipase 1 (.1) Potri.019G024400
[exp]
6.92 0.9741
AT3G22640 PAP85 cupin family protein (.1) Potri.006G002500
[exp]
8.77 0.9655
Potri.007G097700
[exp]
9.48 0.9626
AT2G26910 PEC1, ABCG32, P... PERMEABLE CUTICLE 1, ATP-bindi... Potri.018G074500
[exp]
9.59 0.9418

Potri.005G200900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.