Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G58830 340 / 3e-118 haloacid dehalogenase (HAD) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G060600 [exp] 424 / 6e-151 AT3G58830 354 / 9e-122 haloacid dehalogenase (HAD) superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020774 [exp] 372 / 8e-131 AT3G58830 341 / 2e-116 haloacid dehalogenase (HAD) superfamily protein (.1) Lus10007350 [exp] 368 / 7e-129 AT3G58830 338 / 2e-115 haloacid dehalogenase (HAD) superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0137 [poplar] [flax] HAD PF13242 [poplar] [flax] Hydrolase_like HAD-hyrolase-like
Representative CDS sequence Show only first row Show all	>Potri.005G201100.3 pacid=42802531 polypeptide=Potri.005G201100.3.p locus=Potri.005G201100 ID=Potri.005G201100.3.v4.1 annot-version=v4.1 ATGTGGTGGAAAGACTTGAGAGCTACTTTCAGCCAAAGAATCAACGTTGAAGGAATTGGTTCGTCGGCTTCCGTGCTTGTTAAGGACCAGCATATGGCTC TGCCTCATGTTTTAGTGCCTGATATAAGGTACATTGATTGGGGAGAGTTGCAAAGGAGAGGCTTTAAAGGTGTGGTGTTTGATAAGGATAATACTATCAC CGTGCCTTACTCTTTGACAATTTGGGACCCTCTTGATGCGTCCATTGAGAGGTGTAAATCTGTTTTTGGGAATGATATCGCTGTGTTCAGTAACTCTGCT GGTCTCTTCGAGTACGATCATGACGATTCAAAAGCCAGGGCACTTGAGAAGGCAATTGGAATTAAAGTAATAAGGCACAGGGTAAAGAAACCTGCTGGAA CAGCTGAAGAAATTGAAAAGCACTTTGGCTGCAAATCCTCACAGCTTGTAATGGTGGGTGATCGGCCCTTCACAGACATTGTTTATGGAAACCAAAATGG CTTTTTGACGGTATTAACGAAGCCACTGAGTCTTGTGGAGGAACCATTCATTGTTAGGCAGGTGCGGAAACTAGAAATGTCTCTTATGAACTATTGGCTT AAAAGAGGAATGAAGCCAATCAGTCATAATCTACTACCAGATGCCATGGAATGTGTAAAAGATCCGCCACCTTTGTAG
AA sequence Show only first row Show all	>Potri.005G201100.3 pacid=42802531 polypeptide=Potri.005G201100.3.p locus=Potri.005G201100 ID=Potri.005G201100.3.v4.1 annot-version=v4.1 MWWKDLRATFSQRINVEGIGSSASVLVKDQHMALPHVLVPDIRYIDWGELQRRGFKGVVFDKDNTITVPYSLTIWDPLDASIERCKSVFGNDIAVFSNSA GLFEYDHDDSKARALEKAIGIKVIRHRVKKPAGTAEEIEKHFGCKSSQLVMVGDRPFTDIVYGNQNGFLTVLTKPLSLVEEPFIVRQVRKLEMSLMNYWL KRGMKPISHNLLPDAMECVKDPPPL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G58830			haloacid dehalogenase (HAD) su...		Potri.005G201100 [exp]	0	1
AT3G52390			TatD related DNase (.1.2)		Potri.016G068400 [exp]	1.00	0.8269
AT4G26810			SWIB/MDM2 domain superfamily p...		Potri.015G137600 [exp]	3.87	0.7994
AT4G38130		ATHDA19, ATHD1,...	ARABIDOPSIS HISTONE DEACETYLAS...		Potri.009G170700 [exp]	10.39	0.7873	HDA902,RPD3.1
AT5G54180		PTAC15	plastid transcriptionally acti...		Potri.015G005200 [exp]	18.11	0.8016
AT5G65880			unknown protein		Potri.007G006700 [exp]	18.49	0.7928
AT1G26480		GF14IOTA, GRF12	general regulatory factor 12 (...		Potri.002G097500 [exp]	20.19	0.7620	Pt-GRF10.2
AT1G01290		CNX3	cofactor of nitrate reductase ...		Potri.014G099500 [exp]	28.61	0.7195
AT3G20740		FIE1, FIS3, FIE	FERTILIZATION-INDEPENDENT ENDO...		Potri.001G417300 [exp]	38.96	0.7560	FIE.1,PGE901
AT5G04840	bZIP		bZIP protein (.1)		Potri.010G242800 [exp]	39.06	0.7212
AT2G27490		ATCOAE	dephospho-CoA kinase family (....		Potri.010G206900 [exp]	40.81	0.7554

Compare expression of checked genes

Potri.005G201100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.