Plant FIBer expression Database

Potri.005G201300 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G06540 42 / 6e-05 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.002G060300
[exp]
261 / 4e-87 ND /
Flax homologues

No hit found
PFAM info
Representative CDS sequence
>Potri.005G201300.2 pacid=42803222 polypeptide=Potri.005G201300.2.p locus=Potri.005G201300 ID=Potri.005G201300.2.v4.1 annot-version=v4.1
ATGGAGGAAGCTTCAAATGGGAAAAATGAGACCAAAATTGTGGAACGACAGGAAGTTATTGAGGAAGTTGAGGTGGTCGATTCAGGGGATAAATTTTTGA
AAGAAGTTGTTATTGATAGTACTGCTGAGTCTGTGAAAGAAACTATTGATGAGAATAATTCGAGTTTAGAGGGCAGCAATAGTTCGAAGGAAGAGGCAAA
GGCTAAAGAGAAAACAGTTCAAGTGGAGGATTCAGAGATACTGGAAGTGGCGGACAAAGAGGTGATTAATTTAGCTGTTGGGTCGACCGAGTCTGTGGAG
GAAAAATTGGCTGAAACTATTGAAGCATTGGTGGAGAAATATGAGAACTCTGATGTGGCTGAAGTAGAAGTGAAAGAAACCAAAGAGAAGGTTTCGGTGC
CTTTGAACGAAACTGGTGTCTTTCCTTCAGTTGTCACGGATCAGAATGATGCGGAAGTACCTGAAGTGGTATTGAATGCAACAGATGGATCTTCTCTTGC
TGTAACAGATGAAGTGTCCAAGGGAATTGAGGAGAACGTGTTGCAATCTCTTGATGAAAACAACGTGGCTCCTCCAGCTTTGACAGAGGCAGTGTCAAAG
GGGATCGAGGACGAGAAGCTGGCAGCTTTGAAGGAAAATACTGGGGAATCATCTGGCAATGTTGACAATGAAACTGTGGAAAGTTTCGAATCTACTACTG
TAGTTGGAAGCAGCGATGCTTTTCCTGAAAGCACAGGAGATCCGCCTATCATATCCCTTCAACAGCGTAACCTGTGTCCATCTTGGAGGAACTGCTGTGG
CCTTTTTGAAGCTCTGAGGCGATCCAATAGATAA
AA sequence
>Potri.005G201300.2 pacid=42803222 polypeptide=Potri.005G201300.2.p locus=Potri.005G201300 ID=Potri.005G201300.2.v4.1 annot-version=v4.1
MEEASNGKNETKIVERQEVIEEVEVVDSGDKFLKEVVIDSTAESVKETIDENNSSLEGSNSSKEEAKAKEKTVQVEDSEILEVADKEVINLAVGSTESVE
EKLAETIEALVEKYENSDVAEVEVKETKEKVSVPLNETGVFPSVVTDQNDAEVPEVVLNATDGSSLAVTDEVSKGIEENVLQSLDENNVAPPALTEAVSK
GIEDEKLAALKENTGESSGNVDNETVESFESTTVVGSSDAFPESTGDPPIISLQQRNLCPSWRNCCGLFEALRRSNR

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT1G06540 unknown protein Potri.005G201300
[exp]
0 1
AT5G48370 Thioesterase/thiol ester dehyd... Potri.014G174800
[exp]
2.00 0.9347
AT5G02800 CDL1 CDG1-like 1, Protein kinase su... Potri.006G133300
[exp]
4.58 0.9138
AT1G67970 HSF AT-HSFA8 heat shock transcription facto... Potri.008G136800
[exp]
6.00 0.9220 Pt-HSF5.2
AT5G01950 Leucine-rich repeat protein ki... Potri.016G140200
[exp]
6.16 0.9152
AT4G25450 ABCB28, ATNAP8 ARABIDOPSIS THALIANA NON-INTRI... Potri.015G136700
[exp]
6.32 0.9315 Pt-NAP8.1
AT2G16980 Major facilitator superfamily ... Potri.004G178600
[exp]
7.74 0.9333
AT2G38970 Zinc finger (C3HC4-type RING f... Potri.001G082150
[exp]
8.00 0.9221
AT3G21790 UDP-Glycosyltransferase superf... Potri.006G007400
[exp]
9.16 0.8914
AT1G11330 S-locus lectin protein kinase ... Potri.001G412100
[exp]
9.59 0.9119
AT4G13250 NYC1, NYC NON-YELLOW COLORING 1, NAD(P)-... Potri.018G081200
[exp]
10.72 0.9267

Potri.005G201300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.