Plant FIBer expression Database

Potri.005G201350 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues

No hit found
PFAM info
Representative CDS sequence
>Potri.005G201350.2 pacid=42803212 polypeptide=Potri.005G201350.2.p locus=Potri.005G201350 ID=Potri.005G201350.2.v4.1 annot-version=v4.1
ATGCAAGGTGGAATCTGGCCTTGCTTTTCAGGAAAACCCACAAGCTCTTTTAATTTTATGTTGATAAAGACTAAAGTTGCAATATTGCAGTTTCTCCTTA
CTGCTGCTATATCTGGTAAAACATTCCCTGCGTTGCTTCAGATTTGTTCCCTGCAACAAAAGAATCCCTCTAGCAAGGCTTTCTTTGGCATTGTTTTTTG
CTTTTTCAGAATTATTCCGGAACATTCATTTCCTGTTGGTCGATACATATCTATGATTGGTGTAGAAATTCTGTTACTGCTAGAGTTAGGACGCTCTTGG
TTGGACTTCATTGATCAGCGGATTGTGGAAACTCCTTGCTGTGTGCTCGGGGCTTTTGCTTCTTTGTGCTAA
AA sequence
>Potri.005G201350.2 pacid=42803212 polypeptide=Potri.005G201350.2.p locus=Potri.005G201350 ID=Potri.005G201350.2.v4.1 annot-version=v4.1
MQGGIWPCFSGKPTSSFNFMLIKTKVAILQFLLTAAISGKTFPALLQICSLQQKNPSSKAFFGIVFCFFRIIPEHSFPVGRYISMIGVEILLLLELGRSW
LDFIDQRIVETPCCVLGAFASLC

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
Potri.005G201350
[exp]
0 1
AT4G15733 SCRL11 SCR-like 11 (.1) Potri.009G162300
[exp]
3.16 0.8342
AT1G03670 ankyrin repeat family protein ... Potri.018G077250
[exp]
3.60 0.8516
AT5G24060 Pentatricopeptide repeat (PPR)... Potri.004G072400
[exp]
6.48 0.8367
AT1G76890 Trihelix AT-GT2, GT2 Duplicated homeodomain-like su... Potri.005G192000
[exp]
9.48 0.8393
AT5G48960 HAD-superfamily hydrolase, sub... Potri.008G205900
[exp]
10.19 0.8304
AT1G30270 PKS17, ATCIPK23... SNF1-RELATED PROTEIN KINASE 3.... Potri.006G062800
[exp]
10.48 0.8068
Potri.003G044301
[exp]
10.81 0.8297
AT2G30600 BTB/POZ domain-containing prot... Potri.005G251300
[exp]
11.31 0.8354
AT4G33000 SCABP8, ATCBL10... SOS3-LIKE CALCIUM BINDING PROT... Potri.003G037800
[exp]
13.49 0.8231
AT1G11330 S-locus lectin protein kinase ... Potri.004G027666
[exp]
14.83 0.8267

Potri.005G201350 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.