Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G42880 904 / 0 ATMPK20 MAP kinase 20 (.1) AT3G14720 746 / 0 ATMPK19 ARABIDOPSIS THALIANA MAP KINASE 19, MAP kinase 19 (.1) AT1G53510 741 / 0 ATMPK18 ARABIDOPSIS THALIANA MAP KINASE 18, mitogen-activated protein kinase 18 (.1) AT5G19010 714 / 0 ATMPK16 mitogen-activated protein kinase 16 (.1) AT3G18040 664 / 0 ATMPK9 MAP kinase 9 (.1.2) AT1G73670 655 / 0 ATMPK15 MAP kinase 15 (.1) AT1G18150 641 / 0 ATMPK8 Protein kinase superfamily protein (.1.2.3) AT2G01450 591 / 0 ATMPK17 MAP kinase 17 (.1.2.3.4) AT4G01370 328 / 5e-107 ATMPK4 MAP kinase 4 (.1) AT3G45640 313 / 2e-101 ATMAPK3, ATMPK3 mitogen-activated protein kinase 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G059900 [exp] 1118 / 0 AT2G42880 897 / 0.0 MAP kinase 20 (.1) Potri.011G102500 [exp] 842 / 0 AT3G14720 874 / 0.0 ARABIDOPSIS THALIANA MAP KINASE 19, MAP kinase 19 (.1) Potri.001G381300 [exp] 841 / 0 AT3G14720 875 / 0.0 ARABIDOPSIS THALIANA MAP KINASE 19, MAP kinase 19 (.1) Potri.008G200800 [exp] 722 / 0 AT5G19010 922 / 0.0 mitogen-activated protein kinase 16 (.1) Potri.010G029700 [exp] 720 / 0 AT5G19010 921 / 0.0 mitogen-activated protein kinase 16 (.1) Potri.012G048600 [exp] 681 / 0 AT3G18040 793 / 0.0 MAP kinase 9 (.1.2) Potri.015G040300 [exp] 675 / 0 AT3G18040 767 / 0.0 MAP kinase 9 (.1.2) Potri.010G112200 [exp] 628 / 0 AT1G73670 687 / 0.0 MAP kinase 15 (.1) Potri.008G130000 [exp] 623 / 0 AT1G73670 697 / 0.0 MAP kinase 15 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013702 [exp] 791 / 0 AT1G53510 845 / 0.0 ARABIDOPSIS THALIANA MAP KINASE 18, mitogen-activated protein kinase 18 (.1) Lus10005568 [exp] 789 / 0 AT1G53510 853 / 0.0 ARABIDOPSIS THALIANA MAP KINASE 18, mitogen-activated protein kinase 18 (.1) Lus10041234 [exp] 687 / 0 AT5G19010 911 / 0.0 mitogen-activated protein kinase 16 (.1) Lus10021945 [exp] 677 / 0 AT5G19010 912 / 0.0 mitogen-activated protein kinase 16 (.1) Lus10038956 [exp] 669 / 0 AT3G18040 817 / 0.0 MAP kinase 9 (.1.2) Lus10027248 [exp] 625 / 0 AT3G18040 741 / 0.0 MAP kinase 9 (.1.2) Lus10021784 [exp] 608 / 0 AT1G73670 706 / 0.0 MAP kinase 15 (.1) Lus10034601 [exp] 509 / 2e-176 AT1G73670 597 / 0.0 MAP kinase 15 (.1) Lus10017518 [exp] 325 / 4e-106 AT4G01370 632 / 0.0 MAP kinase 4 (.1) Lus10027091 [exp] 325 / 2e-105 AT2G43790 692 / 0.0 MAP kinase 6 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF06293 [poplar] [flax] Kdo Lipopolysaccharide kinase (Kdo/WaaP) family
Representative CDS sequence Show only first row Show all	>Potri.005G201800.1 pacid=42803361 polypeptide=Potri.005G201800.1.p locus=Potri.005G201800 ID=Potri.005G201800.1.v4.1 annot-version=v4.1 ATGCAGCAGCAAGATCATAGAAAAAAGAATTCAACTGAAATGGACTTCTTCTCAGAATATGGTGATGCCAATAGGTACAAAATTCAGGAAGTTATCGGGA AAGGCAGTTATGGTGTTGTTTGCTCTGCAATTGACACTCACACTGGTGAGAAAGTGGCAATAAAGAAAATACATGATATTTTTGAACACATTTCCGATGC TGCTCGTATATTGCGTGAGATAAAGCTGCTTAGGCTCCTAAGACATCCTGATATTGTGGAAATTAAGCACATCATGCTACCACCTTCAAGAAGGGATTTT AAGGATATCTATGTTGTTTTTGAGCTCATGGAGTCGGATCTCCATCAAGTCATCAAAGCCAATGATGACTTGACACGAGAGCACTATCAATTTTTTCTTT ATCAGCTACTTCGTGCGTTAAAGTATATCCACACAGCAAATGTTTATCATCGAGATTTAAAGCCGAAGAATATATTGGCGAATGCGAATTGTAAGCTTAA AATCTGTGATTTTGGGTTAGCAAGAGTTGCTTTCAATGATACACCCTCAACAATATTCTGGACGGATTATGTTGCTACAAGGTGGTATAGAGCTCCTGAA CTCTGTGGGTCTTTTTTCTCTAAGTATACACCAGCAATTGATATATGGAGTATAGGCTGCATTTTTGCTGAAGTGATAACAGGGAAACCTCTTTTTCCTG GCAAAAATGTTGTTCACCAGTTGGACTTAATGACTGATCTACTTGGTACGCCGTCATTAGATACAATCTCACGGGTTCGAAATGATAAGGCAAGGAGATA CTTAACTAGCATGAGGAAAAAGGCGCCTGTTCCATTTGCACAGAAATTTCTGAATGCAGATCCTTTGGCACTATGTTTGTTGGAAAGGCTGCTTGCTTTT GACCCCAAAGACCGGCCGACTGCTGAAGAGGCACTGGGAGATCCTTACTTTAAGGGATTGGCAAAAGTCGAGAGGGAGCCTTCCTGCCAACCAATAACAA AGATGGAGTTTGAGTTTGAGAGACGGAGAGTTACAAAGGAGGACATACGAGAGCTAATCTTTCGGGAGATACTGGAATACCATCCTCAACTGCTCAAGGA CTATGTAAATGGAACTGAGAGGACTAACTTTCTCTATCCAAGTGCGGTTGATCAATTCAGAAAGCAGTTTGCACATCTTGAGGAAAATGGTGGTAAAAGT GGGCCTGTAATTCCACTTGAAAGGAAGCATGTATCTCTTCCCAGGTCTACAGTTGTACATTCAAGCTCAATCCCTTCCAAAGAACAACAGAACCTTGCTT CCTTCAAGGACAGGCACTCCGCAGAGGAAGTGTATAACAAAAACCCCCGAGACTCTGAAGGAATTCCCATAAATATATCAAGAACCTTGCAGGCACAGCA GAGAATTCCACTGGCTAAACCTGGAAAGGTTGTGGGGTCAGTTGTGCCATACGAGAATGGAAGCAACACGAAAGATGCTTATGACCCAAGAACATACATC AGAAGTACAGTCCTTCCTCTGCAGGCTGTCCCTTCTGCATATTGTTACCGCAAATCTAGCACAGGAAAGCTAGAACGATCTACCATGGAAGCTGAAAGAG ACCTGTCCTCGCAAAAGCAAGTCAAGCAATGTGGCATGGCTGCCAAATATGCTCCAGATGTTGCTATCAACATCGACTCCAACCCATTTTTTATGACAAG GGTGGGAGGGAGCAAGGAAGAACATGTGGATGACCGGGTGATGATTGACACAAGTTTGATGCAGACCAAGGCACAGTATGGTGGTATTGGTGCTGCTGCT GCTGCGACCGCATCTAGAGCTGCTTACAGAAAGGTCGGAACTGTTCAATATGGTATGGCAAGGATGTACTAG
AA sequence Show only first row Show all	>Potri.005G201800.1 pacid=42803361 polypeptide=Potri.005G201800.1.p locus=Potri.005G201800 ID=Potri.005G201800.1.v4.1 annot-version=v4.1 MQQQDHRKKNSTEMDFFSEYGDANRYKIQEVIGKGSYGVVCSAIDTHTGEKVAIKKIHDIFEHISDAARILREIKLLRLLRHPDIVEIKHIMLPPSRRDF KDIYVVFELMESDLHQVIKANDDLTREHYQFFLYQLLRALKYIHTANVYHRDLKPKNILANANCKLKICDFGLARVAFNDTPSTIFWTDYVATRWYRAPE LCGSFFSKYTPAIDIWSIGCIFAEVITGKPLFPGKNVVHQLDLMTDLLGTPSLDTISRVRNDKARRYLTSMRKKAPVPFAQKFLNADPLALCLLERLLAF DPKDRPTAEEALGDPYFKGLAKVEREPSCQPITKMEFEFERRRVTKEDIRELIFREILEYHPQLLKDYVNGTERTNFLYPSAVDQFRKQFAHLEENGGKS GPVIPLERKHVSLPRSTVVHSSSIPSKEQQNLASFKDRHSAEEVYNKNPRDSEGIPINISRTLQAQQRIPLAKPGKVVGSVVPYENGSNTKDAYDPRTYI RSTVLPLQAVPSAYCYRKSSTGKLERSTMEAERDLSSQKQVKQCGMAAKYAPDVAINIDSNPFFMTRVGGSKEEHVDDRVMIDTSLMQTKAQYGGIGAAA AATASRAAYRKVGTVQYGMARMY

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G42880		ATMPK20	MAP kinase 20 (.1)		Potri.005G201800 [exp]	0	1
AT2G39050		ArathEULS3	Euonymus lectin S3, hydroxypro...		Potri.019G031500 [exp]	5.29	0.8044
AT1G32770	NAC	NST3, ANAC012, ...	SECONDARY WALL-ASSOCIATED NAC ...		Potri.001G448400 [exp]	6.24	0.8330
AT2G22560			Kinase interacting (KIP1-like)...		Potri.005G147300 [exp]	15.87	0.8242
AT1G19870		IQD32	IQ-domain 32 (.1)		Potri.002G025200 [exp]	16.06	0.8251
AT4G27430		CIP7	COP1-interacting protein 7 (.1...		Potri.011G122900 [exp]	20.24	0.8191	Pt-CIP7.1
AT3G20860		ATNEK5	NIMA-related kinase 5 (.1)		Potri.016G051900 [exp]	21.16	0.8254
AT3G59690		IQD13	IQ-domain 13 (.1)		Potri.013G127200 [exp]	25.21	0.8057
AT2G46770	NAC	NST1, ANAC043, ...	NAC SECONDARY WALL THICKENING...		Potri.002G178700 [exp]	27.92	0.7877
AT4G22120			ERD (early-responsive to dehyd...		Potri.004G006000 [exp]	32.98	0.7984
AT5G47820		FRA1	FRAGILE FIBER 1, P-loop contai...		Potri.014G024700 [exp]	39.34	0.7968

Compare expression of checked genes

Potri.005G201800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.