Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G42910 566 / 0 Phosphoribosyltransferase family protein (.1) AT1G10700 489 / 3e-174 PRS3 phosphoribosyl pyrophosphate (PRPP) synthase 3 (.1) AT2G35390 79 / 2e-16 Phosphoribosyltransferase family protein (.1.2.3) AT1G32380 74 / 1e-14 PRS2 phosphoribosyl pyrophosphate (PRPP) synthase 2 (.1) AT2G44530 72 / 6e-14 Phosphoribosyltransferase family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G059700 [exp] 616 / 0 AT2G42910 575 / 0.0 Phosphoribosyltransferase family protein (.1) Potri.010G045000 [exp] 503 / 9e-180 AT1G10700 566 / 0.0 phosphoribosyl pyrophosphate (PRPP) synthase 3 (.1) Potri.001G145700 [exp] 84 / 6e-18 AT2G35390 657 / 0.0 Phosphoribosyltransferase family protein (.1.2.3) Potri.003G088400 [exp] 81 / 8e-17 AT2G35390 655 / 0.0 Phosphoribosyltransferase family protein (.1.2.3) Potri.014G179600 [exp] 75 / 7e-15 AT2G44530 628 / 0.0 Phosphoribosyltransferase family protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031395 [exp] 568 / 0 AT2G42910 578 / 0.0 Phosphoribosyltransferase family protein (.1) Lus10010935 [exp] 566 / 0 AT2G42910 572 / 0.0 Phosphoribosyltransferase family protein (.1) Lus10020768 [exp] 561 / 0 AT2G42910 582 / 0.0 Phosphoribosyltransferase family protein (.1) Lus10007345 [exp] 559 / 0 AT2G42910 579 / 0.0 Phosphoribosyltransferase family protein (.1) Lus10006202 [exp] 487 / 2e-173 AT1G10700 577 / 0.0 phosphoribosyl pyrophosphate (PRPP) synthase 3 (.1) Lus10036849 [exp] 486 / 4e-173 AT1G10700 577 / 0.0 phosphoribosyl pyrophosphate (PRPP) synthase 3 (.1) Lus10012074 [exp] 76 / 4e-15 AT2G44530 605 / 0.0 Phosphoribosyltransferase family protein (.1.2) Lus10040098 [exp] 74 / 2e-14 AT2G35390 639 / 0.0 Phosphoribosyltransferase family protein (.1.2.3) Lus10030948 [exp] 62 / 1e-10 AT2G35390 613 / 0.0 Phosphoribosyltransferase family protein (.1.2.3) Lus10027908 [exp] 57 / 4e-09 AT2G44530 555 / 0.0 Phosphoribosyltransferase family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0533 [poplar] [flax] PRTase-like PF00156 [poplar] [flax] Pribosyltran Phosphoribosyl transferase domain CL0533 [poplar] [flax] PRTase-like PF13793 [poplar] [flax] Pribosyltran_N N-terminal domain of ribose phosphate pyrophosphokinase
Representative CDS sequence Show only first row Show all	>Potri.005G202100.1 pacid=42803451 polypeptide=Potri.005G202100.1.p locus=Potri.005G202100 ID=Potri.005G202100.1.v4.1 annot-version=v4.1 ATGGAGGTGGACAAAGTAGAGACTCAAAACCAACAACAGAAACACAAGCAAGTACATCTGTTTTACTGCTTGGAATCCGAAGAGCTTGCCCGTAAAGTTG CCGGTCACTCTGACCTCATCACCCTGCAATCCATCAACTGGAGGAATTTTGATGATGGATTTCCTAACCTTTTTATAAACAATGCTGAAGATTTGCGGGG TCAGCATGTTGCCTTCCTTGCATGTTTTAGTTCCCCGGGAGTTATCTTCGAACAGCTATCTGTCATTTATGCGCTGCCACGTCTGTTTGCTGCTTCTTTC ACATTGGTGTTGCCTTTCTTTCCAACTGGCTCCTTCGAGCGAATGGAAGAAGAAGGGGATGTTGCAACTGCATTTACCATGGCAAGGATATTGTCAAACA TTCCCATTTCAAGAGGTGGCCCCACTAGTCTAGTCATATATGACATACACGCACTGCAGGAAAGGTTCTATTTTGGGGACCAAGTTTTGCCTTTATTTGT GACTGGGATTCCTCTGTTAAAGCAACGTCTTCACCAACTTCCTGAATCCGATAAGATTGCTGTTGCATTTCCAGATGATGGAGCTTGGAAGCGATTCCAC AAGCTGTTGGATCATTTTCCTATGGTGGTATGTGTGAAGGTTCGTGAAGGTGATGAGAGGATAGTTAGAATAAAGGAGGGAAATCCTGCTGGTTACCATG TTGTCATTGTTGATGATTTGGTACAATCTGGAGGCACACTTGTTGAGTGCCAGAAAGTATTAGCAGCTCACGGTGCAGCAAAAGTAAGTGCATATGTCAC CCACGGTGTCTTTCCTAAGCGCTCTTGGGAGCGTTTCACTCACAAAAATGAGGCAGGCATGGAGGATGCATTTGCCTATTTTTGGATAACAGATTCCTGC CCTCACACTGTGAAAGCCATAGCAAATAAGCGTCCATTTGAAGTTTTGAGTCTTGCTGGATCCATTGCTGATGCTTTACAAATATGA
AA sequence Show only first row Show all	>Potri.005G202100.1 pacid=42803451 polypeptide=Potri.005G202100.1.p locus=Potri.005G202100 ID=Potri.005G202100.1.v4.1 annot-version=v4.1 MEVDKVETQNQQQKHKQVHLFYCLESEELARKVAGHSDLITLQSINWRNFDDGFPNLFINNAEDLRGQHVAFLACFSSPGVIFEQLSVIYALPRLFAASF TLVLPFFPTGSFERMEEEGDVATAFTMARILSNIPISRGGPTSLVIYDIHALQERFYFGDQVLPLFVTGIPLLKQRLHQLPESDKIAVAFPDDGAWKRFH KLLDHFPMVVCVKVREGDERIVRIKEGNPAGYHVVIVDDLVQSGGTLVECQKVLAAHGAAKVSAYVTHGVFPKRSWERFTHKNEAGMEDAFAYFWITDSC PHTVKAIANKRPFEVLSLAGSIADALQI

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G42910			Phosphoribosyltransferase fami...		Potri.005G202100 [exp]	0	1
					Potri.001G298600 [exp]	18.00	0.6038
AT5G48870		SAD1	SUPERSENSITIVE TO ABA AND DROU...		Potri.009G072500 [exp]	31.84	0.5860	SAD1.1
AT1G12680		PEPKR2	phosphoenolpyruvate carboxylas...		Potri.007G112400 [exp]	32.55	0.6214
AT3G13440			S-adenosyl-L-methionine-depend...		Potri.003G157201 [exp]	38.53	0.5673
AT5G55000		FIP2	potassium channel tetramerisat...		Potri.013G062500 [exp]	73.48	0.5713
AT5G25360			unknown protein		Potri.006G068600 [exp]	105.72	0.5416
AT3G54640		TRP3, TSA1	TRYPTOPHAN-REQUIRING 3, trypto...		Potri.002G045700 [exp]	146.58	0.5157	TSA1.2
AT5G42990		UBC18	ubiquitin-conjugating enzyme 1...		Potri.002G030800 [exp]	162.27	0.5089
AT2G03620		AtMRS2-5, AtMGT...	magnesium transporter 3 (.1.2)		Potri.008G096200 [exp]	257.93	0.5000

Compare expression of checked genes

Potri.005G202100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.