Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G06520 652 / 0 ATGPAT1, GPAT1 glycerol-3-phosphate acyltransferase 1 (.1) AT2G38110 450 / 4e-154 ATGPAT6, GPAT6 glycerol-3-phosphate acyltransferase 6 (.1) AT1G02390 437 / 2e-148 ATGPAT2, GPAT2 ARABIDOPSIS THALIANA GLYCEROL-3-PHOSPHATE ACYLTRANSFERASE 2, glycerol-3-phosphate acyltransferase 2 (.1) AT4G01950 436 / 2e-148 ATGPAT3, GPAT3 glycerol-3-phosphate acyltransferase 3 (.1) AT1G01610 420 / 2e-142 ATGPAT4, GPAT4 glycerol-3-phosphate acyltransferase 4 (.1) AT3G11430 414 / 3e-140 ATGPAT5, GPAT5 glycerol-3-phosphate acyltransferase 5 (.1) AT5G06090 409 / 4e-138 ATGPAT7, GPAT7 glycerol-3-phosphate acyltransferase 7 (.1) AT4G00400 406 / 4e-137 AtGPAT8, GPAT8 glycerol-3-phosphate acyltransferase 8 (.1) AT3G11325 234 / 1e-71 Phospholipid/glycerol acyltransferase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G063900 [exp] 485 / 6e-168 AT2G38110 533 / 0.0 glycerol-3-phosphate acyltransferase 6 (.1) Potri.006G198100 [exp] 481 / 4e-166 AT2G38110 527 / 0.0 glycerol-3-phosphate acyltransferase 6 (.1) Potri.016G113100 [exp] 475 / 8e-164 AT2G38110 789 / 0.0 glycerol-3-phosphate acyltransferase 6 (.1) Potri.006G097800 [exp] 467 / 7e-161 AT2G38110 809 / 0.0 glycerol-3-phosphate acyltransferase 6 (.1) Potri.002G192600 [exp] 453 / 1e-154 AT4G01950 601 / 0.0 glycerol-3-phosphate acyltransferase 3 (.1) Potri.010G201200 [exp] 425 / 1e-144 AT3G11430 720 / 0.0 glycerol-3-phosphate acyltransferase 5 (.1) Potri.014G085500 [exp] 415 / 3e-140 AT4G00400 757 / 0.0 glycerol-3-phosphate acyltransferase 8 (.1) Potri.008G058200 [exp] 408 / 1e-137 AT5G06090 704 / 0.0 glycerol-3-phosphate acyltransferase 7 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010934 [exp] 671 / 0 AT1G06520 605 / 0.0 glycerol-3-phosphate acyltransferase 1 (.1) Lus10031396 [exp] 670 / 0 AT1G06520 595 / 0.0 glycerol-3-phosphate acyltransferase 1 (.1) Lus10020767 [exp] 642 / 0 AT1G06520 569 / 0.0 glycerol-3-phosphate acyltransferase 1 (.1) Lus10010741 [exp] 466 / 3e-160 AT2G38110 555 / 0.0 glycerol-3-phosphate acyltransferase 6 (.1) Lus10002500 [exp] 458 / 4e-157 AT2G38110 683 / 0.0 glycerol-3-phosphate acyltransferase 6 (.1) Lus10036684 [exp] 455 / 8e-156 AT2G38110 558 / 0.0 glycerol-3-phosphate acyltransferase 6 (.1) Lus10001449 [exp] 426 / 4e-144 AT4G01950 517 / 2e-180 glycerol-3-phosphate acyltransferase 3 (.1) Lus10002421 [exp] 410 / 4e-138 AT4G01950 514 / 2e-179 glycerol-3-phosphate acyltransferase 3 (.1) Lus10029839 [exp] 391 / 1e-131 AT4G01950 449 / 9e-155 glycerol-3-phosphate acyltransferase 3 (.1) Lus10004711 [exp] 388 / 6e-130 AT3G11430 743 / 0.0 glycerol-3-phosphate acyltransferase 5 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0228 [poplar] [flax] Acyltransferase PF01553 [poplar] [flax] Acyltransferase Acyltransferase
Representative CDS sequence Show only first row Show all	>Potri.005G202200.1 pacid=42802698 polypeptide=Potri.005G202200.1.p locus=Potri.005G202200 ID=Potri.005G202200.1.v4.1 annot-version=v4.1 ATGGTCTTCCAAATGGTGCTTCTCAAGTTTGCAGACTGGATCTTGTACCAGCTCCTGGCTAACTCATGTTACAGGGCTGCTAGGAAGATGAGAAGTTACG GGTTCTTTTTGAAAAACCATTCTCTAAAATCATCACAGCAACAAGCTCCTTCGTTCCCTAATGTGTTCAAGTGTGGTTTGGAAAATAGGGGCTCTGATAT TTTGGTGTGTGACATTCATGGGGGCTTATTAAGAACAGAATCTTTCTTTCCTTATTTCATGCTAGTTGCTTTCGAAGGAGGTAGCATACTTAGAGCATTT TTGTTGCTGTTATCATGTCCTATTTTGTGGGTTTTAGACTATGAGCTTAAGTTGAGGGCCATGATATTTATCACCTTTTGTGGGCTTAGGTTGAAGGATA TGGAGAATGTTAGTAGAGCTGTTTTGCCTAAGTTTTATCTTGAGAATCTTCATCTCAAGGCTTTTGAGGTGTTAGCTTCAACTGGGTCCAGGTTTGCTTT TACAAGTGTCCCTAGAGTCATGGTCGAAGGATTTCTCAAGGAATATTTGCTGTTTGACAATGTGACAGGGACTGAATTGCACACTGTTGGGCACTACTTT ACCGGTTTGGTGTCTGATTCTGGTTTAGTTTTGAAGCACAGAGCCCTAAAGGATTACTTCGGAGACAAGAAGCCTGACATAGGCCTTGGAAGTTCAAGCC TCCATGACCACCTTTTCATATCGCTTTGCAAGGAAGCTTACGTGGTGAGCAGGGACGAGGGCAAGAGCGGTACAAGTTCGGTAATGCCAAGGGACAAGTA CCCTAAACCTCTTGTATTTCATGACGGAAGGCTAGCTTTCTTGCCCACTCCGTTGGCTACTCTTTCAATGTTTATGTGGCTCCCAATAGGAGTATTTCTT GCCTTCTTTAGACTCTTTGTTGGTATTCACCTTCCTTATAAATTAGCACTGTTTTTGGGCATATGGAGTGGTTTGGACCTAAGAGTCAAAGGGTGCAGCC CTTCAAGGTCAGGTCACAGAAAAGGGATACTCTATGTTTGCACCCATCGAACACTTTTGGACCCGGTTTTTCTCAGCACATCTTTAGGTCAGCCACTGAC TGCTGTCACGTACAGCCTGAGCAGGATGTCAGAAATAATTGCCCCTATTAAAACGGTGAGGTTGACAAGAGATAGAAAACAAGATGGTAGGACAATGCAA AGATTGCTAAGTGAAGGTGACTTAGTGGTATGCCCTGAAGGAACCACATGTAGAGAGCCATATTTGTTGAGGTTTAGTTCTCTGTTTGCTGAACTAGCTA ATGAGATGGTCCCTGTGGCCATGAACACTCGTGTAAGCATGTTCTATGGAACAACTGCAAGTGGGTTAAAATGCTTGGATCCCATTTTCTTTTTGATGAA CCCTAGACCCAGCTACCACATCCAGATTCTTGAGAAGTTGCCTAGAGAGCTCACATGTGCTGGGGGGAGATCAAGCTGTGAAGTTGCAAACTACATACAA AGAAAATTGGCTGATACTTTAGGATTTGAGTGCACTACTCTTACAAGGAAGGACAAGTACATGATGCTCGCAGGAAATGAAGGAATTGTCCAGGATAAGA GAGAGAAATCCCAGTCAATTGGCAAATAA
AA sequence Show only first row Show all	>Potri.005G202200.1 pacid=42802698 polypeptide=Potri.005G202200.1.p locus=Potri.005G202200 ID=Potri.005G202200.1.v4.1 annot-version=v4.1 MVFQMVLLKFADWILYQLLANSCYRAARKMRSYGFFLKNHSLKSSQQQAPSFPNVFKCGLENRGSDILVCDIHGGLLRTESFFPYFMLVAFEGGSILRAF LLLLSCPILWVLDYELKLRAMIFITFCGLRLKDMENVSRAVLPKFYLENLHLKAFEVLASTGSRFAFTSVPRVMVEGFLKEYLLFDNVTGTELHTVGHYF TGLVSDSGLVLKHRALKDYFGDKKPDIGLGSSSLHDHLFISLCKEAYVVSRDEGKSGTSSVMPRDKYPKPLVFHDGRLAFLPTPLATLSMFMWLPIGVFL AFFRLFVGIHLPYKLALFLGIWSGLDLRVKGCSPSRSGHRKGILYVCTHRTLLDPVFLSTSLGQPLTAVTYSLSRMSEIIAPIKTVRLTRDRKQDGRTMQ RLLSEGDLVVCPEGTTCREPYLLRFSSLFAELANEMVPVAMNTRVSMFYGTTASGLKCLDPIFFLMNPRPSYHIQILEKLPRELTCAGGRSSCEVANYIQ RKLADTLGFECTTLTRKDKYMMLAGNEGIVQDKREKSQSIGK

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G06520		ATGPAT1, GPAT1	glycerol-3-phosphate acyltrans...		Potri.005G202200 [exp]	0	1
AT3G63240			DNAse I-like superfamily prote...		Potri.005G212700 [exp]	2.23	0.8800
AT3G50830		ATCOR413-PM2, C...	cold-regulated 413-plasma memb...		Potri.009G109800 [exp]	2.44	0.8788
AT5G09520		PELPK2	Pro-Glu-Leu|Ile|Val-Pro-Lys 2,...		Potri.018G146200 [exp]	7.74	0.8465
AT5G06300		LOG7	LONELY GUY 7, Putative lysine ...		Potri.005G237600 [exp]	10.95	0.8285
AT4G05100	MYB	ATMYB74	myb domain protein 74 (.1)		Potri.019G118200 [exp]	13.11	0.8737
AT1G05450			Bifunctional inhibitor/lipid-t...		Potri.010G085200 [exp]	16.43	0.8658
AT1G35910		TPPD	trehalose-6-phosphate phosphat...		Potri.012G001000 [exp]	16.73	0.8694
					Potri.017G047400 [exp]	18.00	0.8596
AT2G38870			Serine protease inhibitor, pot...		Potri.006G212200 [exp]	19.44	0.8656
AT4G03540			Uncharacterised protein family...		Potri.004G043300 [exp]	24.65	0.8629

Compare expression of checked genes

Potri.005G202200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.