Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G42900 134 / 2e-37 Plant basic secretory protein (BSP) family protein (.1) AT2G15220 63 / 1e-11 Plant basic secretory protein (BSP) family protein (.1) AT2G15130 52 / 1e-07 Plant basic secretory protein (BSP) family protein (.1), Plant basic secretory protein (BSP) family protein (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G299400 [exp] 56 / 3e-09 AT2G15220 280 / 2e-96 Plant basic secretory protein (BSP) family protein (.1) Potri.001G299500 [exp] 55 / 9e-09 AT2G15220 298 / 1e-103 Plant basic secretory protein (BSP) family protein (.1) Potri.009G094600 [exp] 52 / 7e-08 AT2G15220 288 / 3e-99 Plant basic secretory protein (BSP) family protein (.1) Potri.009G094500 [exp] 49 / 2e-06 AT2G15220 269 / 8e-92 Plant basic secretory protein (BSP) family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031462 [exp] 155 / 2e-45 AT2G42900 144 / 9e-42 Plant basic secretory protein (BSP) family protein (.1) Lus10013867 [exp] 70 / 8e-14 AT2G15220 201 / 1e-64 Plant basic secretory protein (BSP) family protein (.1) Lus10026584 [exp] 68 / 4e-13 AT2G15220 201 / 6e-65 Plant basic secretory protein (BSP) family protein (.1) Lus10013868 [exp] 64 / 1e-11 AT2G15220 217 / 3e-71 Plant basic secretory protein (BSP) family protein (.1) Lus10026585 [exp] 63 / 2e-11 AT2G15220 207 / 2e-67 Plant basic secretory protein (BSP) family protein (.1) Lus10013866 [exp] 59 / 3e-10 AT2G15220 202 / 8e-66 Plant basic secretory protein (BSP) family protein (.1) Lus10026582 [exp] 58 / 1e-09 AT2G15220 206 / 1e-66 Plant basic secretory protein (BSP) family protein (.1) Lus10019802 [exp] 56 / 7e-09 AT2G15220 187 / 3e-59 Plant basic secretory protein (BSP) family protein (.1) Lus10014107 [exp] 56 / 1e-08 AT2G15220 222 / 2e-72 Plant basic secretory protein (BSP) family protein (.1) Lus10001608 [exp] 54 / 1e-08 AT2G15220 182 / 2e-58 Plant basic secretory protein (BSP) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0126 [poplar] [flax] Peptidase_MA PF04450 [poplar] [flax] BSP Peptidase of plants and bacteria
Representative CDS sequence Show only first row Show all	>Potri.005G202300.1 pacid=42803810 polypeptide=Potri.005G202300.1.p locus=Potri.005G202300 ID=Potri.005G202300.1.v4.1 annot-version=v4.1 ATGGAAGACCCTTCCCTCATCCAACCCATCCTGATCCCCAGAGATATTGCCACTGCCTCCTCCTCCTCCACCACCACCACCACCACCTCCTTCTACTACT TTGATGACACGGATGCTGACTACATCAAGCATTGGTCTTCAAATTCTAGCATCATTCTTCGGCTTCTTTTGATCACTTCCATTGGAATTATCTCCATCTG GGCAAACTATGAAGCATCAAAAGGCTTCGGTATTACATTAGTCAACGATGCCAAAGACTCCGCAGAAGGCAAACGCTTCACCCTCTCGTACATTTCCAAC GACAAAGCCACCCGTATAATCCTAAACACTAGCCTCTTCGTTGAAAACCTTCTTTATCCGAATATCAACGACGACACCAAGAAGCAAGTGATCCACCATG TTACTCTAAGGCTGGCCAGCAACAACCTACCAAACTTGGTCACGGTGGACACCAACACCAACAATGAGTTTGTCATCAACATAAGTCCATCAGTATTAAT GGGCCATCCTAAAAACCTTGATTATGCAATTACATCAGTTGTTTTACAAGGTATGGCTCGTGCATGGATATGGGACTCCGAGTCTAGAGCTCCGCAATGG CTCCTTGATGGCATGGTGGAGTACATTAATGGGTTGGCTGGTTTTGGCCCTGTGAGAAATCTTGGTGGCCACGAGTCACTGGATGATCAATTTGGTAAAT TTTGCTCAGGAGATAAGGATCCTATGGTTGTGGCACAATTTTTGAAAAACTGTGAGAGACATGAAAAGGGATTCATCCAACGGTTAAATAAAGCTCTGAG AGACGATCATCAGTGGATCGGCCGGACGGTGGAGGACGTGCTAGGGATATCGGAACAGAATCTATGTGATTTGTACAAGAACACGTCACAAGGTTTGTCA AGCTGGTGA
AA sequence Show only first row Show all	>Potri.005G202300.1 pacid=42803810 polypeptide=Potri.005G202300.1.p locus=Potri.005G202300 ID=Potri.005G202300.1.v4.1 annot-version=v4.1 MEDPSLIQPILIPRDIATASSSSTTTTTTSFYYFDDTDADYIKHWSSNSSIILRLLLITSIGIISIWANYEASKGFGITLVNDAKDSAEGKRFTLSYISN DKATRIILNTSLFVENLLYPNINDDTKKQVIHHVTLRLASNNLPNLVTVDTNTNNEFVINISPSVLMGHPKNLDYAITSVVLQGMARAWIWDSESRAPQW LLDGMVEYINGLAGFGPVRNLGGHESLDDQFGKFCSGDKDPMVVAQFLKNCERHEKGFIQRLNKALRDDHQWIGRTVEDVLGISEQNLCDLYKNTSQGLS SW

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G42900			Plant basic secretory protein ...		Potri.005G202300 [exp]	0	1
AT1G68490			unknown protein		Potri.012G056500 [exp]	3.46	0.7575
					Potri.013G104601 [exp]	6.48	0.7161
AT1G16650			S-adenosyl-L-methionine-depend...		Potri.007G065300 [exp]	8.12	0.7480
AT1G65550			Xanthine/uracil permease famil...		Potri.014G015100 [exp]	11.18	0.7181
AT3G05920			Heavy metal transport/detoxifi...		Potri.002G032800 [exp]	12.24	0.6823
AT5G25360			unknown protein		Potri.006G254000 [exp]	24.49	0.5998
AT5G03415	E2F_DP	ATDPB, DPB	Transcription factor DP (.1.2)		Potri.016G093200 [exp]	27.71	0.6584
AT3G62880		ATOEP16-4	Mitochondrial import inner mem...		Potri.014G128900 [exp]	31.81	0.7036
					Potri.013G066640 [exp]	44.45	0.6785
					Potri.001G379150 [exp]	44.58	0.6877

Compare expression of checked genes

Potri.005G202300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.