Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G42920 660 / 0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT5G48910 425 / 2e-142 LPA66 LOW PSII ACCUMULATION 66, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G66520 388 / 2e-128 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G06540 383 / 2e-126 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT2G20540 370 / 2e-122 MEF21 mitochondrial editing factor 21 (.1) AT3G62890 366 / 2e-120 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT4G18840 365 / 3e-120 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT5G08305 357 / 1e-117 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT2G29760 357 / 6e-115 OTP81 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G40405 352 / 2e-114 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G065500 [exp] 405 / 3e-135 AT5G06540 828 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.014G191200 [exp] 394 / 2e-130 AT5G48910 852 / 0.0 LOW PSII ACCUMULATION 66, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.005G012600 [exp] 391 / 5e-129 AT2G29760 540 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.007G073100 [exp] 387 / 7e-129 AT5G08305 600 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.009G044700 [exp] 392 / 2e-128 AT2G29760 1013 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.004G237000 [exp] 385 / 2e-127 AT5G66520 544 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.001G108500 [exp] 379 / 6e-126 AT4G18840 382 / 3e-127 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Potri.018G071800 [exp] 382 / 8e-125 AT1G08070 606 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.018G035900 [exp] 376 / 1e-124 AT2G20540 709 / 0.0 mitochondrial editing factor 21 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007341 [exp] 724 / 0 AT2G42920 610 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Lus10029344 [exp] 421 / 4e-141 AT5G06540 803 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10014298 [exp] 409 / 5e-136 AT5G66520 748 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10026006 [exp] 405 / 8e-135 AT5G66520 746 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10030053 [exp] 398 / 6e-131 AT1G08070 884 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10020743 [exp] 374 / 4e-122 AT1G04840 771 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10029793 [exp] 370 / 8e-121 AT1G04840 756 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10040680 [exp] 362 / 9e-117 AT2G29760 926 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10004052 [exp] 358 / 1e-116 AT1G31430 684 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Lus10018223 [exp] 360 / 3e-116 AT2G29760 931 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF01535 [poplar] [flax] PPR PPR repeat CL0020 [poplar] [flax] TPR PF13041 [poplar] [flax] PPR_2 PPR repeat family
Representative CDS sequence Show only first row Show all	>Potri.005G202600.2 pacid=42804599 polypeptide=Potri.005G202600.2.p locus=Potri.005G202600 ID=Potri.005G202600.2.v4.1 annot-version=v4.1 ATGATACCATGTTGTTGCTCCCTAATTCCATCACCGGCTTCCATATCCAAGTTCATCTCAGACCAACCTTACCTCTCCATGCTAGACAAAAATTGCACTT CAATGAAAGACCTTCAAAAAATCCATGCCCAACTCATAAAAACTGGCCTAGCGAAAGACACCATTGCTGCTAGCCGTGTTTTGGCCTTCTGTACCTCTCC TGCAGGTGACATCAACTATGCCTACTTAGTCTTCACACAAATACGAAACCCAAACCTTTTTGTATGGAACACTATTATCAGAGGCTTCTCTCAAAGCTCA ACTCCACACAATGCAATCTCTTTATTTATTGACATGATGTTCACTTCACCAACTACTCAACCTCAAAGGCTGACTTATCCTTCAGTTTTCAAGGCTTATG CTCAACTTGGTCTAGCCCACGAAGGTGCTCAGCTTCATGGCAGAGTGATAAAACTGGGACTTGAAAATGATCAGTTTATACAAAATACAATCTTGAATAT GTATGTAAATTGTGGGTTTTTGGGTGAAGCTCAGAGAATTTTTGATGGAGCTACGGGATTTGATGTTGTTACGTGGAATACGATGATTATAGGACTTGCT AAATGTGGAGAGATTGATAAGTCTAGGAGGTTGTTTGATAAGATGTTGTTGAGGAATACAGTGTCATGGAATTCTATGATTAGTGGGTATGTGAGGAAAG GCAGGTTCTTTGAGGCAATGGAGCTCTTTAGCAGAATGCAAGAGGAGGGGATTAAGCCTAGTGAATTTACAATGGTGAGCTTGTTAAATGCTTGTGCTTG CTTAGGAGCACTGAGACAGGGAGAATGGATTCATGATTATATAGTGAAGAACAATTTTGCATTGAACTCTATTGTTATTACAGCGATTATAGACATGTAT TCCAAGTGTGGAAGCATAGATAAGGCTCTTCAAGTGTTCAAGAGTGCCCCCAAGAAAGGATTATCATGCTGGAACTCCCTAATTTTAGGCCTAGCCATGA GTGGCCGTGGGAATGAAGCAGTCCGATTATTTTCAAAGCTCGAGTCTTCAAATCTCAAACCGGACCATGTTAGTTTTATAGGAGTCCTGACAGCTTGTAA TCACGCTGGGATGGTGGACAGGGCAAAGGACTATTTCTTGTTAATGTCAGAAACATACAAGATCGAGCCATCGATAAAACATTATAGCTGCATGGTTGAT GTGCTAGGCAGAGCAGGACTCCTTGAAGAGGCAGAAGAGCTAATAAAAAGCATGCCAGTAAACCCAGATGCCATTATATGGGGGTCTTTACTCTCCTCTT GCAGGGAGTACGGAAACATTGAGATGGCAAAACAAGCGGCGAAGCGTGTGAATGAGTTGGATCCAAATGAGAGCTCAAGTTTTATACTTCTGTCAAACGT TTATGCTGCTCATAATCATTTTGAAGAAGCAATTGAGCAAAGGCTCTCTCTGAAAGAGAAGCAGATGGACAAAGAACCTGGATGTAGTTTGATTGAAGTG AATGGCGAGGTTCATGAATTCGTTGCGGGGGGACGCCTGCATCCAAGATCCAAAGATATCTACCATGCATTGGATGATCTGGGATTGACGTTAAAGGAGA TGGGATAG
AA sequence Show only first row Show all	>Potri.005G202600.2 pacid=42804599 polypeptide=Potri.005G202600.2.p locus=Potri.005G202600 ID=Potri.005G202600.2.v4.1 annot-version=v4.1 MIPCCCSLIPSPASISKFISDQPYLSMLDKNCTSMKDLQKIHAQLIKTGLAKDTIAASRVLAFCTSPAGDINYAYLVFTQIRNPNLFVWNTIIRGFSQSS TPHNAISLFIDMMFTSPTTQPQRLTYPSVFKAYAQLGLAHEGAQLHGRVIKLGLENDQFIQNTILNMYVNCGFLGEAQRIFDGATGFDVVTWNTMIIGLA KCGEIDKSRRLFDKMLLRNTVSWNSMISGYVRKGRFFEAMELFSRMQEEGIKPSEFTMVSLLNACACLGALRQGEWIHDYIVKNNFALNSIVITAIIDMY SKCGSIDKALQVFKSAPKKGLSCWNSLILGLAMSGRGNEAVRLFSKLESSNLKPDHVSFIGVLTACNHAGMVDRAKDYFLLMSETYKIEPSIKHYSCMVD VLGRAGLLEEAEELIKSMPVNPDAIIWGSLLSSCREYGNIEMAKQAAKRVNELDPNESSSFILLSNVYAAHNHFEEAIEQRLSLKEKQMDKEPGCSLIEV NGEVHEFVAGGRLHPRSKDIYHALDDLGLTLKEMG

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G42920			Pentatricopeptide repeat (PPR-...		Potri.005G202600 [exp]	0	1
AT1G65260		VIPP1, PTAC4	VESICLE-INDUCING PROTEIN IN PL...		Potri.016G099400 [exp]	3.60	0.9622	IM30.2
AT5G55280		ATFTSZ1-1, CPFT...	CHLOROPLAST FTSZ, ARABIDOPSIS ...		Potri.001G359500 [exp]	6.00	0.9456	Pt-FTSZ.1
AT1G69523			S-adenosyl-L-methionine-depend...		Potri.008G088500 [exp]	6.70	0.9504
					Potri.010G145700 [exp]	6.70	0.9571
AT3G18680			Amino acid kinase family prote...		Potri.005G057700 [exp]	6.92	0.9576
AT5G11270		OCP3	overexpressor of cationic pero...		Potri.006G251700 [exp]	7.61	0.9619
					Potri.014G179200 [exp]	7.87	0.9345
AT1G80480		PTAC17	plastid transcriptionally acti...		Potri.001G201400 [exp]	8.36	0.9338
AT4G26370			antitermination NusB domain-co...		Potri.003G222900 [exp]	10.95	0.9515
AT4G10000			Thioredoxin family protein (.1...		Potri.013G102000 [exp]	10.95	0.9550

Compare expression of checked genes

Potri.005G202600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.