Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G29350 56 / 5e-08 Kinase-related protein of unknown function (DUF1296) (.1) AT1G29370 56 / 5e-08 Kinase-related protein of unknown function (DUF1296) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G059300 [exp] 658 / 0 AT1G29350 172 / 3e-44 Kinase-related protein of unknown function (DUF1296) (.1) Potri.001G353100 [exp] 175 / 3e-46 AT1G29350 649 / 0.0 Kinase-related protein of unknown function (DUF1296) (.1) Potri.011G078800 [exp] 149 / 1e-37 AT1G29350 650 / 0.0 Kinase-related protein of unknown function (DUF1296) (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004543 [exp] 154 / 3e-39 AT1G29370 641 / 0.0 Kinase-related protein of unknown function (DUF1296) (.1) Lus10004604 [exp] 146 / 1e-36 AT1G29370 644 / 0.0 Kinase-related protein of unknown function (DUF1296) (.1) Lus10015262 [exp] 124 / 2e-29 AT1G29370 574 / 0.0 Kinase-related protein of unknown function (DUF1296) (.1) Lus10007339 [exp] 97 / 7e-21 AT1G29370 79 / 5e-15 Kinase-related protein of unknown function (DUF1296) (.1) Lus10025382 [exp] 82 / 5e-16 AT1G29350 513 / 4e-171 Kinase-related protein of unknown function (DUF1296) (.1) Lus10020762 [exp] 69 / 5e-12 AT1G29370 70 / 4e-12 Kinase-related protein of unknown function (DUF1296) (.1) Lus10000188 [exp] 53 / 4e-07 AT1G29350 305 / 6e-96 Kinase-related protein of unknown function (DUF1296) (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.005G202851.1 pacid=42805252 polypeptide=Potri.005G202851.1.p locus=Potri.005G202851 ID=Potri.005G202851.1.v4.1 annot-version=v4.1 ATGAAGGAGACACAAGAATCAAAGGTCTGGGGTAAAAACAATGGTTTTTGCGGAGCTAAAGTTGGTGGTGAATATAATGTTGGACATGTACCATCTCAAA TCAGCTGTAATGACCTTGGTAAAGCTGCATATAGGAAAGAGAATGGGCTGGGTGCTCCTCCGGGGCCTTCTTCATCAACTTTGATATATTATGTGAAAAC TGCAAATGAGCAGCCTTCATGCAACAGTGATTTTTGCAATGTTGATGGCAGAAGGCAAGCTACAGGAACTGGTGATACCATTCCTTCATATGCACAAATG TCATCAGGAACCCAAGCTGCTTGTTCAGGAGTTACTGCAGGACATGTTTCTATGGCTAACATTGTTAGGATGGTAAGCTCATCCCAGTACTGTCGTAAAC CTTCATGCGATTCTTCTCCCTCTCCACCAGTAATGCACCAAGGTCTGCAATGTTCACGTCCTTCTCAAGTGCCTGAGACAATTCACCATTCTCATGTTAG TGCGAGCTTTCATGATGAATGGCCTGTGTTTGATCAGCAAACAGCTGCTGATGGGACTAATTTGACTGAAGACCGCCAATTGGAGGAGGTCCAAGTATCA GAGAGTGATGCCGCTAACAAGAATCCAGTTTCTAATTGTGCTGAATCTGCTTTTCCATGTAGAAGACAGGAAAATGTGAATAGTGCTGTAGGTGATTCTT GTTGGGGTGATGGTTTACTGAGGGATACAAGTTATGATTCTCGGAGACGCATGAATGATCGTTGGGAAGGAACTGGTAGTGGCGTCCAATTACCTTTCCC AAATGTTGCTGCACCTTTGAACGATGAAGTATCATCAGCTGCTGCGGACTTGCAGCAGCTAAGTTTGGGGAAGGAGGAACCTGCAGTGCCTCCATCTGAG GATAATCATGCAGTGTTGTTTCCTGAGTATATGCAAGCCTTAGCCGCGGACTTCTCACATTTGAGTTTCGGTACATACAAATCTGGGACTTATCATGCAG TTTCTGTACCACTAGCACTGACTCCCGCAAAGAGTAACTTGGAGAAGGCTTCTGCAGCAGCAAATGGTCCATCCCCTCCATGCAAGGAGATTAGGCGTGA GTCTTTCAGCTTGATTCCAGTATGTGGTACCTGTCTATTTTCATGGCTCATTATAGTACATGCTTTCTTTCTGTGCAGAAATCCCGAGCTCCTTGTTGAG TACCTTCAAGATGAGCAGCTTGGATCCATGTCAGATACACATCGATTAACTGGAGGTGTTGGGATTCATAAGCTTTTATTTTCACCACCAGAGCTAATGA GAGAAAGCATTCATGAAGTACCCCGTGGGCACGAATACACCCATCCAACATCCATACCTGATTCTAATTTTAAGAAAACCCAAGAACTGGGTTTTCCCTT GGGTGTTAGGATACATTCAAAAGCTAAGAACCTTTCTTCTCTTCATATGCAAGCAAGTTCAACAAGTATACCGAAGGATTTATTGGCATCAACTATTCAA TCTTCAAGATATTCTGAGTATGCCAAGTCCTCTTTCATTGGAACCCAATCAATGTCAAGTTTTGGTAGTACTGTATCATCGGCTAGCAATCCAGCCATCT CCCAGTCAGAGGTTCTGAGTCGGAGTGCTTTTTCTCTATCCGTGTCATGTTCACCAACACTGCCTGGTGTCACTCTTGCCCCACAACCCGCACTTTCCCA GCATCTTTCAGCAAATTTGTCCTCTCAACCAGCTGTACCTGACCAATTTGACTGGCTATCCTGCAATGGCTCAGAACCATGCTCATAA
AA sequence Show only first row Show all	>Potri.005G202851.1 pacid=42805252 polypeptide=Potri.005G202851.1.p locus=Potri.005G202851 ID=Potri.005G202851.1.v4.1 annot-version=v4.1 MKETQESKVWGKNNGFCGAKVGGEYNVGHVPSQISCNDLGKAAYRKENGLGAPPGPSSSTLIYYVKTANEQPSCNSDFCNVDGRRQATGTGDTIPSYAQM SSGTQAACSGVTAGHVSMANIVRMVSSSQYCRKPSCDSSPSPPVMHQGLQCSRPSQVPETIHHSHVSASFHDEWPVFDQQTAADGTNLTEDRQLEEVQVS ESDAANKNPVSNCAESAFPCRRQENVNSAVGDSCWGDGLLRDTSYDSRRRMNDRWEGTGSGVQLPFPNVAAPLNDEVSSAAADLQQLSLGKEEPAVPPSE DNHAVLFPEYMQALAADFSHLSFGTYKSGTYHAVSVPLALTPAKSNLEKASAAANGPSPPCKEIRRESFSLIPVCGTCLFSWLIIVHAFFLCRNPELLVE YLQDEQLGSMSDTHRLTGGVGIHKLLFSPPELMRESIHEVPRGHEYTHPTSIPDSNFKKTQELGFPLGVRIHSKAKNLSSLHMQASSTSIPKDLLASTIQ SSRYSEYAKSSFIGTQSMSSFGSTVSSASNPAISQSEVLSRSAFSLSVSCSPTLPGVTLAPQPALSQHLSANLSSQPAVPDQFDWLSCNGSEPCS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G29370			Kinase-related protein of unkn...		Potri.005G202851 [exp]	0	1
AT5G07610			F-box family protein (.1)		Potri.008G016300 [exp]	6.32	0.8818
AT2G16370		THY-1	thymidylate synthase 1 (.1)		Potri.005G230400 [exp]	6.63	0.8276
					Potri.001G298266 [exp]	7.93	0.8693
					Potri.003G027116 [exp]	8.00	0.8668
AT3G13860		HSP60-3A	heat shock protein 60-3A (.1)		Potri.003G039475 [exp]	8.66	0.8753
AT2G42010		PLDBETA1	phospholipase D beta 1 (.1)		Potri.002G152100 [exp]	8.83	0.8445	PLDBETA1.1
					Potri.003G027318 [exp]	9.48	0.8618
					Potri.001G298233 [exp]	9.94	0.8636
AT3G16090		AtHrd1A	homolog of yeast Hrd1, RING/U-...		Potri.013G088400 [exp]	10.48	0.8617
AT1G15780			unknown protein		Potri.003G028089 [exp]	10.95	0.8416

Compare expression of checked genes

Potri.005G202851 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.