Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G18160 308 / 5e-102 KCO6, ATTPK3, ATKCO6 Ca2+ activated outward rectifying K+ channel 6, CA2+ ACTIVATED OUTWARD RECTIFYING K+ CHANNEL 6, Ca2+ activated outward rectifying K+ channel 6 (.1) AT4G01840 301 / 2e-99 KCO5, ATTPK5, ATKCO5 Ca2+ activated outward rectifying K+ channel 5, Ca2+ activated outward rectifying K+ channel 5 (.1) AT5G46370 300 / 2e-98 KCO2, ATTPK2, ATKCO2 Ca2+ activated outward rectifying K+ channel 2, TANDEM PORE K+ CHANNEL 2, CA2+ ACTIVATED OUTWARD RECTIFYING K+ CHANNEL 2, Ca2+ activated outward rectifying K+ channel 2 (.1) AT5G55630 203 / 5e-62 ATTPK1, ATKCO1 TWO PORE K CHANNEL 1, TWO PORE K CHANNEL, CA2+ ACTIVATED OUTWARD RECTIFYING K+ CHANNEL 1, TANDEM PORE K+ CHANNEL 1, Outward rectifying potassium channel protein (.1.2) AT1G02510 186 / 4e-56 KCO4, ATKCO4, ATTPK4 CA2+ ACTIVATED OUTWARD RECTIFYING K+ CHANNEL 4, CA2+ ACTIVATED OUTWARD RECTIFYING K+ CHANNEL 4, Outward rectifying potassium channel protein (.1) AT5G46360 170 / 1e-50 KCO3, ATKCO3 Ca2+ activated outward rectifying K+ channel 3, CA2+ ACTIVATED OUTWARD RECTIFYING K+ CHANNEL 3, Ca2+ activated outward rectifying K+ channel 3 (.1), Ca2+ activated outward rectifying K+ channel 3 (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G059200 [exp] 608 / 0 AT4G18160 303 / 6e-100 Ca2+ activated outward rectifying K+ channel 6, CA2+ ACTIVATED OUTWARD RECTIFYING K+ CHANNEL 6, Ca2+ activated outward rectifying K+ channel 6 (.1) Potri.002G187600 [exp] 347 / 6e-118 AT4G01840 468 / 6e-165 Ca2+ activated outward rectifying K+ channel 5, Ca2+ activated outward rectifying K+ channel 5 (.1) Potri.001G352500 [exp] 347 / 5e-117 AT4G18160 449 / 4e-156 Ca2+ activated outward rectifying K+ channel 6, CA2+ ACTIVATED OUTWARD RECTIFYING K+ CHANNEL 6, Ca2+ activated outward rectifying K+ channel 6 (.1) Potri.011G079100 [exp] 344 / 5e-116 AT4G18160 436 / 2e-151 Ca2+ activated outward rectifying K+ channel 6, CA2+ ACTIVATED OUTWARD RECTIFYING K+ CHANNEL 6, Ca2+ activated outward rectifying K+ channel 6 (.1) Potri.014G113700 [exp] 339 / 9e-115 AT4G01840 420 / 3e-146 Ca2+ activated outward rectifying K+ channel 5, Ca2+ activated outward rectifying K+ channel 5 (.1) Potri.001G366800 [exp] 208 / 4e-64 AT5G55630 370 / 1e-127 TWO PORE K CHANNEL 1, TWO PORE K CHANNEL, CA2+ ACTIVATED OUTWARD RECTIFYING K+ CHANNEL 1, TANDEM PORE K+ CHANNEL 1, Outward rectifying potassium channel protein (.1.2) Potri.016G007200 [exp] 201 / 2e-61 AT5G55630 353 / 2e-121 TWO PORE K CHANNEL 1, TWO PORE K CHANNEL, CA2+ ACTIVATED OUTWARD RECTIFYING K+ CHANNEL 1, TANDEM PORE K+ CHANNEL 1, Outward rectifying potassium channel protein (.1.2) Potri.008G004600 [exp] 198 / 3e-60 AT5G55630 324 / 1e-109 TWO PORE K CHANNEL 1, TWO PORE K CHANNEL, CA2+ ACTIVATED OUTWARD RECTIFYING K+ CHANNEL 1, TANDEM PORE K+ CHANNEL 1, Outward rectifying potassium channel protein (.1.2) Potri.008G004700 [exp] 168 / 6e-49 AT5G55630 323 / 2e-109 TWO PORE K CHANNEL 1, TWO PORE K CHANNEL, CA2+ ACTIVATED OUTWARD RECTIFYING K+ CHANNEL 1, TANDEM PORE K+ CHANNEL 1, Outward rectifying potassium channel protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004525 [exp] 265 / 4e-84 AT4G01840 402 / 3e-137 Ca2+ activated outward rectifying K+ channel 5, Ca2+ activated outward rectifying K+ channel 5 (.1) Lus10004538 [exp] 253 / 3e-81 AT4G18160 362 / 2e-123 Ca2+ activated outward rectifying K+ channel 6, CA2+ ACTIVATED OUTWARD RECTIFYING K+ CHANNEL 6, Ca2+ activated outward rectifying K+ channel 6 (.1) Lus10004611 [exp] 251 / 1e-79 AT4G18160 424 / 1e-146 Ca2+ activated outward rectifying K+ channel 6, CA2+ ACTIVATED OUTWARD RECTIFYING K+ CHANNEL 6, Ca2+ activated outward rectifying K+ channel 6 (.1) Lus10015265 [exp] 259 / 9e-79 AT5G46340 849 / 0.0 REDUCED WALL ACETYLATION 1, O-acetyltransferase family protein (.1) Lus10001912 [exp] 192 / 9e-58 AT5G55630 331 / 2e-112 TWO PORE K CHANNEL 1, TWO PORE K CHANNEL, CA2+ ACTIVATED OUTWARD RECTIFYING K+ CHANNEL 1, TANDEM PORE K+ CHANNEL 1, Outward rectifying potassium channel protein (.1.2) Lus10004417 [exp] 169 / 8e-49 AT5G55630 329 / 2e-111 TWO PORE K CHANNEL 1, TWO PORE K CHANNEL, CA2+ ACTIVATED OUTWARD RECTIFYING K+ CHANNEL 1, TANDEM PORE K+ CHANNEL 1, Outward rectifying potassium channel protein (.1.2) Lus10000044 [exp] 156 / 5e-46 AT5G55630 246 / 1e-81 TWO PORE K CHANNEL 1, TWO PORE K CHANNEL, CA2+ ACTIVATED OUTWARD RECTIFYING K+ CHANNEL 1, TANDEM PORE K+ CHANNEL 1, Outward rectifying potassium channel protein (.1.2) Lus10016613 [exp] 114 / 3e-29 AT5G55630 254 / 7e-84 TWO PORE K CHANNEL 1, TWO PORE K CHANNEL, CA2+ ACTIVATED OUTWARD RECTIFYING K+ CHANNEL 1, TANDEM PORE K+ CHANNEL 1, Outward rectifying potassium channel protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0030 [poplar] [flax] Ion_channel PF07885 [poplar] [flax] Ion_trans_2 Ion channel
Representative CDS sequence Show only first row Show all	>Potri.005G203000.1 pacid=42803985 polypeptide=Potri.005G203000.1.p locus=Potri.005G203000 ID=Potri.005G203000.1.v4.1 annot-version=v4.1 ATGGATGAGCATCTTCTCTCAAGAACAATAGCAGAAGAGTCCTGCAGGCGACCAGGAAGAGAACTCTCCTCTAGTTACCTTGATCTTGGCCAGTCCCTAC GTCAATCGACATCACACCTTGTCACTAATGATGTGATTATCCCCATCATCTCAACACCAAACACTTCTTCATATGTAAATCTCATTGCTAGTTTGAACAA AAAGAAAACAAGACTCCCTTACCGATCTCATTCGGCTCCATCGTTGTTTACAGATGCCAGGGAGACTTTTGCAGATTCTTTCGACCCCAGACCTGGCTCG AAATCAACTCCTTTGATTGTTCGGCAGGCTTTTGTTGGCGTATTCTTGTATGTATTGGTTGTTGTGTTGATTTTCCTTGTCAGTGGCCGCTTCAGGGGCA CCGCAACATTCAAGCCAGTAGATGCCTTGTACTTCACAGTGGTTACACTTTGCACCATTGGCTACGGTGATATCGTTCCAGATACAACTTTTACCAAGCT GTTTACTTGTGGTTTTATCTTGGTTGGTTTTGGCTTCATCGATATTTTGTTAAATGGATTGGTCACGTATATTTGCGATAAGCAAGAAGCCGTTCTGTTA AGCACCATGGATGGGAGCACGCCCACCACCATGGTTCAAGCTTATATGATAGACAAAGCTAAAGGACGAATGAGAATCAGAACGAAAGTGGTCTTGGCTT CGGCAGTGGTCATTGTTTGCATTGCGGTAGGAACTATTACAGTGCACTACCTGGAGAAGTTGGATTGGGTTGATAGTTTTTATCTGGCTGTTACATCCGT GACAACCGTAGGCTATGGGGATTACGCTTTCACAACCATAACTGGAAGATGTTTCGCCATTATTTGGCTATTAGTTAGCACACTGGCAGTTGCCAGGGCT TTTTTGTACCTGGCTGAGCTAAGGATTGACAAGAGGAATCGCAGGATTGCAAAATGGGTTCTTCAGAAAAAGATGACACTGGGCGATTTAGTAGCTGCAG ACCTCGATAATGATGGATCCATCAGCAAATCTGAATTTGTAATATACAAGCTCAAGGAGATGGGGAAAATAGCAGAGAAAGACATCCAGCAGATCTGCAA CCAATTTGATTCATTAGATAGTACCAACTGTGGCAAAATCACTCTTGCCGATCTCATGTAA
AA sequence Show only first row Show all	>Potri.005G203000.1 pacid=42803985 polypeptide=Potri.005G203000.1.p locus=Potri.005G203000 ID=Potri.005G203000.1.v4.1 annot-version=v4.1 MDEHLLSRTIAEESCRRPGRELSSSYLDLGQSLRQSTSHLVTNDVIIPIISTPNTSSYVNLIASLNKKKTRLPYRSHSAPSLFTDARETFADSFDPRPGS KSTPLIVRQAFVGVFLYVLVVVLIFLVSGRFRGTATFKPVDALYFTVVTLCTIGYGDIVPDTTFTKLFTCGFILVGFGFIDILLNGLVTYICDKQEAVLL STMDGSTPTTMVQAYMIDKAKGRMRIRTKVVLASAVVIVCIAVGTITVHYLEKLDWVDSFYLAVTSVTTVGYGDYAFTTITGRCFAIIWLLVSTLAVARA FLYLAELRIDKRNRRIAKWVLQKKMTLGDLVAADLDNDGSISKSEFVIYKLKEMGKIAEKDIQQICNQFDSLDSTNCGKITLADLM

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G18160		KCO6, ATTPK3, A...	Ca2+ activated outward rectify...		Potri.005G203000 [exp]	0	1
AT1G27340			Galactose oxidase/kelch repeat...		Potri.003G171300 [exp]	3.46	0.8894
AT5G47860			Protein of unknown function (D...		Potri.001G072400 [exp]	6.92	0.9107
AT1G55850		ATCSLE1	cellulose synthase like E1 (.1...		Potri.006G004300 [exp]	9.38	0.9143
AT5G09300			Thiamin diphosphate-binding fo...		Potri.005G064000 [exp]	11.48	0.8712
AT3G21070		NADK1, ATNADK-1	NAD kinase 1 (.1.2)		Potri.001G256100 [exp]	14.28	0.9102
AT1G21640		ATNADK2, NADK2,...	NAD kinase 2 (.1.2)		Potri.002G078700 [exp]	17.43	0.9135	NADK2.2
AT5G25220	HD	KNAT3	KNOTTED1-like homeobox gene 3 ...		Potri.006G190000 [exp]	17.88	0.9077
AT5G36210			alpha/beta-Hydrolases superfam...		Potri.002G128700 [exp]	18.33	0.8813
AT5G54250		HLM1, DND2, ATC...	DEFENSE, NO DEATH 2, cyclic nu...		Potri.001G407800 [exp]	19.36	0.8863
AT1G65410		ABCI13, TGD3, A...	TRIGALACTOSYLDIACYLGLYCEROL 3,...		Potri.014G137000 [exp]	21.44	0.8596

Compare expression of checked genes

Potri.005G203000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.